Kocuria coralli

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Micrococcaceae; Kocuria

Average proteome isoelectric point is 5.98

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2933 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5J5L0G3|A0A5J5L0G3_9MICC Protein translocase subunit SecF OS=Kocuria coralli OX=1461025 GN=secF PE=4 SV=1
MM1 pKa = 6.1TTTRR5 pKa = 11.84RR6 pKa = 11.84RR7 pKa = 11.84CAAAALAAAFVLAGCSGGDD26 pKa = 3.45DD27 pKa = 4.12GEE29 pKa = 4.42GAEE32 pKa = 4.64ADD34 pKa = 3.78GGSGSFPSQPINLIVPYY51 pKa = 10.1AAGGSADD58 pKa = 3.29STARR62 pKa = 11.84QLAAVAQDD70 pKa = 3.34TCGAPIIIRR79 pKa = 11.84NATGGSGAVGFQATLSSPADD99 pKa = 3.99GYY101 pKa = 9.26TVGSASIEE109 pKa = 4.1LTMLDD114 pKa = 3.34HH115 pKa = 6.45MGISEE120 pKa = 4.22IHH122 pKa = 6.51PDD124 pKa = 3.76DD125 pKa = 4.03YY126 pKa = 11.71EE127 pKa = 6.64GILQYY132 pKa = 10.59SEE134 pKa = 3.85QPIVFGVPADD144 pKa = 3.65SPYY147 pKa = 11.04QSLQDD152 pKa = 4.51VIDD155 pKa = 3.8SDD157 pKa = 4.88DD158 pKa = 3.77RR159 pKa = 11.84VTVATSGTGGIYY171 pKa = 10.18HH172 pKa = 7.46LGYY175 pKa = 11.01EE176 pKa = 4.51SMALAAGIDD185 pKa = 3.73DD186 pKa = 3.7RR187 pKa = 11.84TVNVPFDD194 pKa = 3.72GAASALQAALGDD206 pKa = 3.73QTAMVSVGAAEE217 pKa = 4.05MRR219 pKa = 11.84PHH221 pKa = 6.95IEE223 pKa = 3.81SGAIRR228 pKa = 11.84PLAIAGDD235 pKa = 3.9PVDD238 pKa = 4.77YY239 pKa = 10.82LPEE242 pKa = 4.43DD243 pKa = 3.76VPTLHH248 pKa = 6.97EE249 pKa = 4.74LGIDD253 pKa = 3.79SEE255 pKa = 4.84TTAILGLYY263 pKa = 9.55APAGVPQDD271 pKa = 3.78RR272 pKa = 11.84IEE274 pKa = 4.54LLNEE278 pKa = 3.99CFNEE282 pKa = 4.1ARR284 pKa = 11.84EE285 pKa = 4.08SDD287 pKa = 3.69QFSDD291 pKa = 3.72YY292 pKa = 11.06MEE294 pKa = 4.37TTGLNQRR301 pKa = 11.84YY302 pKa = 9.18RR303 pKa = 11.84DD304 pKa = 3.82AQEE307 pKa = 4.29FDD309 pKa = 2.92QFMGEE314 pKa = 3.96EE315 pKa = 4.02YY316 pKa = 10.87DD317 pKa = 4.53RR318 pKa = 11.84FGEE321 pKa = 4.45LIDD324 pKa = 4.44EE325 pKa = 4.62IGMGVHH331 pKa = 7.08

Molecular weight: 34.56 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5J5KZH5|A0A5J5KZH5_9MICC Acetamidase OS=Kocuria coralli OX=1461025 GN=FCK90_06135 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 10.04KK16 pKa = 8.86HH17 pKa = 4.36GFRR20 pKa = 11.84ARR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AILSARR35 pKa = 11.84RR36 pKa = 11.84SKK38 pKa = 10.82GRR40 pKa = 11.84ASLSAA45 pKa = 3.83

Molecular weight: 5.2 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2933

0

2933

998786

24

1646

340.5

36.61

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.452 ± 0.052

0.627 ± 0.01

6.056 ± 0.036

6.268 ± 0.041

2.965 ± 0.026

9.184 ± 0.04

2.191 ± 0.021

4.217 ± 0.034

2.078 ± 0.032

9.978 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.061 ± 0.02

2.023 ± 0.022

5.576 ± 0.037

3.208 ± 0.023

7.353 ± 0.047

5.764 ± 0.027

5.882 ± 0.03

8.645 ± 0.039

1.519 ± 0.02

1.954 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski