Victivallis vadensis

Taxonomy: cellular organisms; Bacteria; PVC group; Lentisphaerae; Lentisphaeria; Victivallales; Victivallaceae; Victivallis

Average proteome isoelectric point is 6.76

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4059 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2U1ANM2|A0A2U1ANM2_9BACT Prepilin-type N-terminal cleavage/methylation domain-containing protein/prepilin-type processing-associated H-X9-DG protein OS=Victivallis vadensis OX=172901 GN=C8D82_1297 PE=4 SV=1
MM1 pKa = 8.03DD2 pKa = 4.83EE3 pKa = 4.15SLKK6 pKa = 10.94FISFVVNYY14 pKa = 9.64CRR16 pKa = 11.84NTLIDD21 pKa = 4.18FYY23 pKa = 10.41PYY25 pKa = 10.05QQGHH29 pKa = 5.85EE30 pKa = 4.37KK31 pKa = 10.68LNEE34 pKa = 4.63DD35 pKa = 3.77IYY37 pKa = 11.06GMKK40 pKa = 10.2YY41 pKa = 10.17YY42 pKa = 10.73SEE44 pKa = 3.93DD45 pKa = 3.88HH46 pKa = 6.3EE47 pKa = 4.5WVEE50 pKa = 4.45IVGDD54 pKa = 3.84EE55 pKa = 4.12ATVGISEE62 pKa = 4.45YY63 pKa = 11.13AVDD66 pKa = 4.01EE67 pKa = 5.07LGDD70 pKa = 3.4ITYY73 pKa = 10.29VEE75 pKa = 4.5LPEE78 pKa = 4.87EE79 pKa = 4.34EE80 pKa = 4.87DD81 pKa = 4.0DD82 pKa = 5.61FIIGDD87 pKa = 3.58RR88 pKa = 11.84LGEE91 pKa = 4.17VEE93 pKa = 4.64SVNSSSEE100 pKa = 3.79IYY102 pKa = 10.58SPISGTVSQVNEE114 pKa = 4.11ALADD118 pKa = 3.8EE119 pKa = 5.19PGLINEE125 pKa = 4.36SPEE128 pKa = 4.12DD129 pKa = 3.78KK130 pKa = 10.89GWLCRR135 pKa = 11.84LTNFDD140 pKa = 4.44SSEE143 pKa = 4.35LDD145 pKa = 3.53DD146 pKa = 4.92MMNEE150 pKa = 4.21DD151 pKa = 5.1AYY153 pKa = 11.26QKK155 pKa = 10.35YY156 pKa = 9.82LRR158 pKa = 11.84KK159 pKa = 9.67LRR161 pKa = 11.84RR162 pKa = 3.33

Molecular weight: 18.68 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2U1AE99|A0A2U1AE99_9BACT AlpA family transcriptional regulator OS=Victivallis vadensis OX=172901 GN=C8D82_1485 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNRR10 pKa = 11.84RR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 9.41RR14 pKa = 11.84RR15 pKa = 11.84IGFFARR21 pKa = 11.84MATKK25 pKa = 10.45AGRR28 pKa = 11.84LVIKK32 pKa = 10.44RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84QKK37 pKa = 10.71GRR39 pKa = 11.84AKK41 pKa = 9.64LTAA44 pKa = 4.21

Molecular weight: 5.3 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4059

0

4059

1560380

29

3328

384.4

42.67

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.075 ± 0.04

1.484 ± 0.016

5.135 ± 0.025

6.64 ± 0.035

4.576 ± 0.025

8.07 ± 0.042

1.833 ± 0.015

5.058 ± 0.029

4.32 ± 0.032

10.136 ± 0.041

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.251 ± 0.017

3.612 ± 0.029

5.264 ± 0.033

2.871 ± 0.021

7.253 ± 0.044

5.426 ± 0.027

4.802 ± 0.027

6.529 ± 0.033

1.491 ± 0.016

3.174 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski