Caballeronia insecticola

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Caballeronia

Average proteome isoelectric point is 6.81

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6724 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|R4WGJ1|R4WGJ1_9BURK LexA repressor OS=Caballeronia insecticola OX=758793 GN=lexA PE=3 SV=1
MM1 pKa = 7.66SEE3 pKa = 4.05VIEE6 pKa = 4.22YY7 pKa = 10.35KK8 pKa = 10.44SWVCLICGWIYY19 pKa = 11.0NEE21 pKa = 4.11EE22 pKa = 4.61DD23 pKa = 3.62GLPEE27 pKa = 5.29DD28 pKa = 5.57GIAAGTRR35 pKa = 11.84FGEE38 pKa = 4.66IPDD41 pKa = 3.74DD42 pKa = 3.9WRR44 pKa = 11.84CPLCDD49 pKa = 3.13VGKK52 pKa = 10.52ADD54 pKa = 3.73FVVVEE59 pKa = 5.07FF60 pKa = 4.82

Molecular weight: 6.79 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|R4WPK3|R4WPK3_9BURK Uncharacterized protein OS=Caballeronia insecticola OX=758793 GN=BRPE64_ACDS10310 PE=4 SV=1
MM1 pKa = 7.67KK2 pKa = 10.35KK3 pKa = 10.29NPFLSMWLSGANAVVGSTRR22 pKa = 11.84GRR24 pKa = 11.84ATAQAKK30 pKa = 9.51RR31 pKa = 11.84QVSNFWSAALAPSKK45 pKa = 9.92PKK47 pKa = 10.11KK48 pKa = 9.61RR49 pKa = 11.84RR50 pKa = 11.84ARR52 pKa = 11.84RR53 pKa = 3.28

Molecular weight: 5.87 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6724

0

6724

2040670

37

3414

303.5

32.98

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.856 ± 0.048

0.947 ± 0.009

5.551 ± 0.024

5.163 ± 0.029

3.822 ± 0.019

8.052 ± 0.03

2.346 ± 0.016

4.918 ± 0.021

3.231 ± 0.028

10.01 ± 0.035

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.512 ± 0.016

2.811 ± 0.018

4.983 ± 0.022

3.411 ± 0.018

7.032 ± 0.033

5.673 ± 0.024

5.339 ± 0.023

7.615 ± 0.024

1.34 ± 0.012

2.386 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski