Tursiops truncatus papillomavirus 2

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Upsilonpapillomavirus; Upsilonpapillomavirus 2

Average proteome isoelectric point is 6.5

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q29UC8|Q29UC8_9PAPI Major capsid protein L1 OS=Tursiops truncatus papillomavirus 2 OX=936060 GN=L1 PE=3 SV=1
MM1 pKa = 7.94GDD3 pKa = 3.54RR4 pKa = 11.84EE5 pKa = 4.28NACMEE10 pKa = 3.93RR11 pKa = 11.84MEE13 pKa = 4.32EE14 pKa = 3.91VDD16 pKa = 4.42RR17 pKa = 11.84GDD19 pKa = 3.43RR20 pKa = 11.84DD21 pKa = 3.65EE22 pKa = 6.04GPVEE26 pKa = 4.07YY27 pKa = 10.76LNEE30 pKa = 4.02LCAQLHH36 pKa = 5.98LPVEE40 pKa = 4.72EE41 pKa = 4.83ILINCCFCNCQLSEE55 pKa = 4.01RR56 pKa = 11.84SKK58 pKa = 10.45WEE60 pKa = 3.76QIYY63 pKa = 11.06KK64 pKa = 10.32DD65 pKa = 4.29FKK67 pKa = 10.74LVWRR71 pKa = 11.84EE72 pKa = 3.73GWPHH76 pKa = 6.92GICHH80 pKa = 6.82KK81 pKa = 9.87CQEE84 pKa = 3.9IHH86 pKa = 6.4AVKK89 pKa = 10.5ASWRR93 pKa = 11.84GYY95 pKa = 7.25EE96 pKa = 3.81QSAYY100 pKa = 9.39ACYY103 pKa = 10.48VEE105 pKa = 5.51EE106 pKa = 4.29EE107 pKa = 4.41TGTPLGDD114 pKa = 2.69IYY116 pKa = 10.59MRR118 pKa = 11.84CLYY121 pKa = 10.32CWIPLTGAEE130 pKa = 4.63KK131 pKa = 9.98IHH133 pKa = 5.53MVEE136 pKa = 4.84DD137 pKa = 3.34RR138 pKa = 11.84RR139 pKa = 11.84HH140 pKa = 5.62FIKK143 pKa = 10.72INGYY147 pKa = 8.79WKK149 pKa = 10.31GLCHH153 pKa = 6.59RR154 pKa = 11.84CLWNPPRR161 pKa = 11.84LAAQLGGINVVLPHH175 pKa = 5.95QEE177 pKa = 3.92NEE179 pKa = 4.13GDD181 pKa = 3.98SEE183 pKa = 5.57ADD185 pKa = 3.36TEE187 pKa = 5.06SIGTEE192 pKa = 4.07DD193 pKa = 3.9LSISAGEE200 pKa = 4.04DD201 pKa = 3.38LEE203 pKa = 4.64TEE205 pKa = 4.34LL206 pKa = 5.59

Molecular weight: 23.8 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q1XA73|Q1XA73_9PAPI Regulatory protein E2 OS=Tursiops truncatus papillomavirus 2 OX=936060 GN=E2 PE=3 SV=1
MM1 pKa = 7.69GLQKK5 pKa = 10.61CVTLSGKK12 pKa = 10.21EE13 pKa = 3.76KK14 pKa = 10.17VLQILVVCLEE24 pKa = 3.99PTYY27 pKa = 10.75PLLDD31 pKa = 4.01LFRR34 pKa = 11.84TTHH37 pKa = 5.18LTKK40 pKa = 9.37PTRR43 pKa = 11.84SNKK46 pKa = 7.63TSRR49 pKa = 11.84TGAVPFPHH57 pKa = 6.51QPANKK62 pKa = 9.62PGAQQSKK69 pKa = 7.67TASTSQATSTEE80 pKa = 4.38HH81 pKa = 5.44ATSTEE86 pKa = 3.96GMDD89 pKa = 3.39VEE91 pKa = 4.73VTVTVQVDD99 pKa = 3.51VGNKK103 pKa = 9.85APIVLKK109 pKa = 10.49FQLSS113 pKa = 3.44

Molecular weight: 12.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2482

103

624

354.6

39.3

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.89 ± 0.524

2.538 ± 0.695

5.479 ± 0.661

5.641 ± 1.025

3.707 ± 0.477

7.172 ± 0.536

3.022 ± 0.28

4.512 ± 0.476

5.036 ± 0.856

9.065 ± 1.529

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.135 ± 0.343

3.908 ± 0.659

6.164 ± 1.062

3.183 ± 0.328

5.157 ± 0.483

8.179 ± 0.953

6.769 ± 0.841

6.567 ± 0.558

1.612 ± 0.373

3.263 ± 0.475
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski