Actinidia virus X

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Alphaflexiviridae; Potexvirus

Average proteome isoelectric point is 6.84

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0S2ZXH8|A0A0S2ZXH8_9VIRU Triple gene block protein 2 OS=Actinidia virus X OX=1331744 PE=4 SV=1
MM1 pKa = 7.22EE2 pKa = 5.77LEE4 pKa = 4.09YY5 pKa = 10.75LINLLDD11 pKa = 3.91FYY13 pKa = 11.47GFVRR17 pKa = 11.84SSRR20 pKa = 11.84SFSLPLVIHH29 pKa = 6.41GVAGCGKK36 pKa = 8.46STIISKK42 pKa = 9.36VSCAYY47 pKa = 9.17PKK49 pKa = 10.48LISASFSPQLIDD61 pKa = 3.61PDD63 pKa = 3.61SGRR66 pKa = 11.84RR67 pKa = 11.84QSVVDD72 pKa = 3.74GTTVDD77 pKa = 5.21LLDD80 pKa = 4.78EE81 pKa = 4.27YY82 pKa = 11.51LAGNNPIVRR91 pKa = 11.84LAKK94 pKa = 10.58FSDD97 pKa = 3.57PLQYY101 pKa = 10.9DD102 pKa = 3.8CQSPEE107 pKa = 3.97EE108 pKa = 3.82PHH110 pKa = 6.19YY111 pKa = 10.65RR112 pKa = 11.84ALHH115 pKa = 4.38SHH117 pKa = 6.82RR118 pKa = 11.84FCPATAQLLNKK129 pKa = 9.92IFGCHH134 pKa = 4.92ITSKK138 pKa = 10.65LNTSAVIRR146 pKa = 11.84FADD149 pKa = 3.96AFTEE153 pKa = 4.28DD154 pKa = 4.32PEE156 pKa = 4.64GQVITFEE163 pKa = 4.69PEE165 pKa = 3.78LEE167 pKa = 4.31SLLTAHH173 pKa = 7.49GCPTTPVADD182 pKa = 3.45LWGRR186 pKa = 11.84NIPYY190 pKa = 9.89VSVYY194 pKa = 9.37TSSIGYY200 pKa = 9.65ALEE203 pKa = 4.28NYY205 pKa = 9.83RR206 pKa = 11.84SSLFLALTRR215 pKa = 11.84HH216 pKa = 5.26QKK218 pKa = 9.76QLLIFDD224 pKa = 4.73LDD226 pKa = 3.44ARR228 pKa = 11.84ADD230 pKa = 3.78PTHH233 pKa = 6.37EE234 pKa = 4.08LL235 pKa = 3.66

Molecular weight: 26.13 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0S2ZX53|A0A0S2ZX53_9VIRU Movement protein TGBp3 OS=Actinidia virus X OX=1331744 PE=3 SV=1
MM1 pKa = 7.32SHH3 pKa = 7.64PDD5 pKa = 3.03SSAATLLRR13 pKa = 11.84LSGTCALIPALRR25 pKa = 11.84PLTGSKK31 pKa = 8.24WVYY34 pKa = 10.25RR35 pKa = 11.84SLNALLALTSLRR47 pKa = 11.84PCSHH51 pKa = 6.46QLLLNLKK58 pKa = 9.11GDD60 pKa = 3.92SYY62 pKa = 12.15ANPLCGKK69 pKa = 9.73SKK71 pKa = 9.08PTLSQRR77 pKa = 11.84LAPWPVRR84 pKa = 11.84RR85 pKa = 11.84FRR87 pKa = 11.84MAITSPTT94 pKa = 3.36

Molecular weight: 10.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2376

89

1591

396.0

44.18

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.923 ± 0.482

1.726 ± 0.377

4.924 ± 0.703

5.345 ± 1.077

3.956 ± 0.576

4.882 ± 0.968

3.535 ± 0.924

5.093 ± 0.395

4.882 ± 0.786

9.68 ± 1.037

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.104 ± 0.448

3.998 ± 0.239

7.407 ± 0.789

4.209 ± 0.279

5.051 ± 0.333

6.439 ± 1.139

7.576 ± 0.445

5.766 ± 0.473

1.136 ± 0.167

3.367 ± 0.355
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski