Labilithrix luteola

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Sorangiineae; Labilitrichaceae; Labilithrix

Average proteome isoelectric point is 6.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 11481 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0K1PLF3|A0A0K1PLF3_9DELT Response regulator of zinc sigma-54-dependent two-component system OS=Labilithrix luteola OX=1391654 GN=AKJ09_00613 PE=4 SV=1
MM1 pKa = 7.39QGRR4 pKa = 11.84KK5 pKa = 9.56DD6 pKa = 3.63GQEE9 pKa = 3.87GGEE12 pKa = 4.51TNGSPGTACPTDD24 pKa = 3.36AGGADD29 pKa = 3.54TSLPPGDD36 pKa = 4.63AQPDD40 pKa = 3.5AHH42 pKa = 7.1VDD44 pKa = 3.48PDD46 pKa = 4.62GPPLDD51 pKa = 4.79ASTDD55 pKa = 3.77DD56 pKa = 4.88VVDD59 pKa = 4.66ASCPGDD65 pKa = 3.97DD66 pKa = 4.01AAADD70 pKa = 3.84SGMDD74 pKa = 3.51AADD77 pKa = 3.66ATTDD81 pKa = 3.6ASDD84 pKa = 3.36AAQPEE89 pKa = 4.57DD90 pKa = 3.88GGSDD94 pKa = 3.4ASDD97 pKa = 4.17GGPSDD102 pKa = 4.13AGSDD106 pKa = 3.76VNVPPDD112 pKa = 3.28ASSDD116 pKa = 3.76VTCTFTRR123 pKa = 11.84SHH125 pKa = 6.43TGANDD130 pKa = 3.18ACNYY134 pKa = 9.54CVLPPEE140 pKa = 4.08VTISIEE146 pKa = 4.77HH147 pKa = 5.35VPLWIDD153 pKa = 3.23HH154 pKa = 6.44GEE156 pKa = 4.05HH157 pKa = 6.11GVGIEE162 pKa = 4.3GQGDD166 pKa = 4.74LPPQPPPPVPPKK178 pKa = 10.47RR179 pKa = 11.84VIHH182 pKa = 6.01VDD184 pKa = 2.95APTVFDD190 pKa = 3.85SWWMFGDD197 pKa = 3.91AFVLSGTPPSEE208 pKa = 4.54SYY210 pKa = 11.03VSSNMPFVPNGGFNGTITVGSGNATSLTLNGSHH243 pKa = 7.2FPATFGCVALHH254 pKa = 6.04GCFVEE259 pKa = 6.33KK260 pKa = 10.26IACTGTGIAEE270 pKa = 4.08NRR272 pKa = 3.62

Molecular weight: 27.39 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0K1Q8I9|A0A0K1Q8I9_9DELT Uncharacterized protein OS=Labilithrix luteola OX=1391654 GN=AKJ09_08789 PE=4 SV=1
MM1 pKa = 7.55LLGSSRR7 pKa = 11.84LRR9 pKa = 11.84LRR11 pKa = 11.84KK12 pKa = 8.79RR13 pKa = 11.84TSLHH17 pKa = 5.34ARR19 pKa = 11.84AAFAARR25 pKa = 11.84RR26 pKa = 11.84VARR29 pKa = 11.84GSRR32 pKa = 11.84RR33 pKa = 11.84HH34 pKa = 5.31QPANKK39 pKa = 8.76HH40 pKa = 5.66KK41 pKa = 10.54KK42 pKa = 8.14GTTIRR47 pKa = 3.67

Molecular weight: 5.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

11481

0

11481

3621879

37

4320

315.5

33.9

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.638 ± 0.032

1.324 ± 0.022

5.878 ± 0.02

5.76 ± 0.028

3.357 ± 0.016

8.683 ± 0.027

2.016 ± 0.01

3.783 ± 0.013

3.294 ± 0.018

9.276 ± 0.026

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.898 ± 0.01

2.387 ± 0.014

5.894 ± 0.022

2.585 ± 0.012

7.5 ± 0.029

6.429 ± 0.02

5.927 ± 0.021

8.146 ± 0.02

1.279 ± 0.009

1.946 ± 0.013
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski