Faeces associated gemycircularvirus 6

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemycircularvirus; Gemycircularvirus geras1; Gerygone associated gemycircularvirus 1

Average proteome isoelectric point is 7.42

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|T1YTB5|T1YTB5_9VIRU Replication-associated protein OS=Faeces associated gemycircularvirus 6 OX=1391035 PE=3 SV=1
MM1 pKa = 7.4LFVNSRR7 pKa = 11.84YY8 pKa = 10.26VLLTYY13 pKa = 9.15AQCGDD18 pKa = 4.04LDD20 pKa = 3.67PWSVSNHH27 pKa = 4.96LSALGAEE34 pKa = 4.68CIVARR39 pKa = 11.84EE40 pKa = 4.05IHH42 pKa = 6.37PTTGGIHH49 pKa = 5.94LHH51 pKa = 6.55CFADD55 pKa = 4.79FNRR58 pKa = 11.84KK59 pKa = 8.41FRR61 pKa = 11.84SRR63 pKa = 11.84SARR66 pKa = 11.84IFDD69 pKa = 3.35VDD71 pKa = 3.29GRR73 pKa = 11.84HH74 pKa = 6.11PNVVPSRR81 pKa = 11.84GTPEE85 pKa = 3.6KK86 pKa = 10.76GYY88 pKa = 10.89DD89 pKa = 3.47YY90 pKa = 10.69AIKK93 pKa = 10.86DD94 pKa = 3.32GDD96 pKa = 3.69VRR98 pKa = 11.84AGGLGRR104 pKa = 11.84PAPRR108 pKa = 11.84GGMSVGAHH116 pKa = 5.72ALVNVAHH123 pKa = 6.8LCEE126 pKa = 4.55DD127 pKa = 3.34TTEE130 pKa = 3.89FLEE133 pKa = 5.06LHH135 pKa = 7.02DD136 pKa = 4.25EE137 pKa = 4.15MDD139 pKa = 3.55RR140 pKa = 11.84SGLIARR146 pKa = 11.84FNNVRR151 pKa = 11.84AYY153 pKa = 10.56ADD155 pKa = 2.93WRR157 pKa = 11.84FRR159 pKa = 11.84PEE161 pKa = 3.76PVVYY165 pKa = 10.49ASPDD169 pKa = 3.4GVDD172 pKa = 4.02FRR174 pKa = 11.84SGSTDD179 pKa = 3.69GRR181 pKa = 11.84DD182 pKa = 3.16DD183 pKa = 3.47WLVQSRR189 pKa = 11.84IGDD192 pKa = 3.6EE193 pKa = 4.4LPFVSAPVANAPFAGYY209 pKa = 9.78IFCLLILYY217 pKa = 8.78GPSLTGKK224 pKa = 5.82TTWARR229 pKa = 11.84SLGDD233 pKa = 3.68HH234 pKa = 6.97IFIQGVLSGKK244 pKa = 9.67EE245 pKa = 3.84VLNSDD250 pKa = 3.22EE251 pKa = 4.26SARR254 pKa = 11.84YY255 pKa = 8.86AVLDD259 pKa = 4.81DD260 pKa = 3.6IRR262 pKa = 11.84GGLKK266 pKa = 10.03FFPAWKK272 pKa = 9.72DD273 pKa = 3.06WLGGQRR279 pKa = 11.84WISVKK284 pKa = 10.17QMYY287 pKa = 9.78RR288 pKa = 11.84DD289 pKa = 4.32PILLKK294 pKa = 10.04WGRR297 pKa = 11.84PCIWCANRR305 pKa = 11.84DD306 pKa = 3.32PRR308 pKa = 11.84ADD310 pKa = 2.98IRR312 pKa = 11.84RR313 pKa = 11.84SIDD316 pKa = 3.24KK317 pKa = 10.8DD318 pKa = 3.57DD319 pKa = 3.85GCFMEE324 pKa = 7.34DD325 pKa = 4.31DD326 pKa = 4.17MDD328 pKa = 4.65WINANCIFVYY338 pKa = 10.45VDD340 pKa = 3.23EE341 pKa = 4.72SLVTFRR347 pKa = 11.84ASTEE351 pKa = 3.77

Molecular weight: 39.38 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|T1YTB5|T1YTB5_9VIRU Replication-associated protein OS=Faeces associated gemycircularvirus 6 OX=1391035 PE=3 SV=1
MM1 pKa = 7.53PRR3 pKa = 11.84FARR6 pKa = 11.84RR7 pKa = 11.84SSRR10 pKa = 11.84FRR12 pKa = 11.84SRR14 pKa = 11.84KK15 pKa = 5.84TARR18 pKa = 11.84SSQRR22 pKa = 11.84TRR24 pKa = 11.84RR25 pKa = 11.84PARR28 pKa = 11.84RR29 pKa = 11.84SRR31 pKa = 11.84RR32 pKa = 11.84TPRR35 pKa = 11.84RR36 pKa = 11.84SRR38 pKa = 11.84RR39 pKa = 11.84RR40 pKa = 11.84GMSTRR45 pKa = 11.84SILNKK50 pKa = 8.93TSRR53 pKa = 11.84KK54 pKa = 8.91KK55 pKa = 10.53RR56 pKa = 11.84NGMLTISNTQATGNPDD72 pKa = 3.44AFAQQPLTLIGSNTGGSIGVVHH94 pKa = 6.84FRR96 pKa = 11.84PTCMDD101 pKa = 4.27LASPTGVANSIVNQSQRR118 pKa = 11.84TSSTCFMRR126 pKa = 11.84GLAEE130 pKa = 3.9NLRR133 pKa = 11.84IEE135 pKa = 4.43TSSGNPWFHH144 pKa = 6.54RR145 pKa = 11.84RR146 pKa = 11.84VCITSRR152 pKa = 11.84DD153 pKa = 3.65DD154 pKa = 3.47NFRR157 pKa = 11.84LVATGDD163 pKa = 3.42NTGPQAAIMASGGIEE178 pKa = 4.11TSNGWQRR185 pKa = 11.84LAGNAQAGSEE195 pKa = 4.27LDD197 pKa = 3.32RR198 pKa = 11.84TIVVWLEE205 pKa = 3.59LLFKK209 pKa = 10.63GRR211 pKa = 11.84QGRR214 pKa = 11.84DD215 pKa = 2.54WDD217 pKa = 5.0DD218 pKa = 4.29IISAPVDD225 pKa = 3.42TTRR228 pKa = 11.84VDD230 pKa = 3.66LKK232 pKa = 10.88FDD234 pKa = 2.86KK235 pKa = 10.73TYY237 pKa = 10.4IYY239 pKa = 10.65RR240 pKa = 11.84SGNEE244 pKa = 3.69SGILKK249 pKa = 9.88EE250 pKa = 3.96KK251 pKa = 10.53KK252 pKa = 9.06LWHH255 pKa = 6.45RR256 pKa = 11.84MNKK259 pKa = 9.35NLYY262 pKa = 10.22FDD264 pKa = 5.5DD265 pKa = 5.82DD266 pKa = 3.91EE267 pKa = 6.7LGAGMEE273 pKa = 4.08SHH275 pKa = 7.61DD276 pKa = 4.56YY277 pKa = 11.19SVTDD281 pKa = 3.08KK282 pKa = 11.02RR283 pKa = 11.84GNGDD287 pKa = 3.09YY288 pKa = 10.74HH289 pKa = 8.32IFDD292 pKa = 4.99FFSQGSSGTTDD303 pKa = 3.4DD304 pKa = 3.63RR305 pKa = 11.84LKK307 pKa = 11.18VRR309 pKa = 11.84FTSTLYY315 pKa = 9.36WHH317 pKa = 7.08EE318 pKa = 4.2KK319 pKa = 9.32

Molecular weight: 36.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

670

319

351

335.0

37.74

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.866 ± 0.917

1.791 ± 0.638

8.06 ± 1.107

3.582 ± 0.335

4.776 ± 0.29

8.657 ± 0.145

2.239 ± 0.268

5.075 ± 0.279

3.582 ± 0.605

7.164 ± 0.671

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.09 ± 0.314

4.328 ± 0.75

4.179 ± 0.783

2.388 ± 0.795

10.448 ± 1.568

8.358 ± 1.489

5.97 ± 2.105

5.522 ± 1.32

2.388 ± 0.38

2.537 ± 0.492
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski