Sulfolobales Beppu rod-shaped virus 1

Taxonomy: Viruses; Adnaviria; Zilligvirae; Taleaviricota; Tokiviricetes; Ligamenvirales; Rudiviridae; Japarudivirus; Japarudivirus SBRV1

Average proteome isoelectric point is 7.05

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 56 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3S8NF50|A0A3S8NF50_9VIRU Ribbon-helix-helix domain OS=Sulfolobales Beppu rod-shaped virus 1 OX=2493121 GN=SBRV1_gp08 PE=4 SV=1
MM1 pKa = 6.65WQDD4 pKa = 3.38IIEE7 pKa = 4.14KK8 pKa = 9.07MKK10 pKa = 10.69RR11 pKa = 11.84CIDD14 pKa = 4.03EE15 pKa = 4.39NCLLQVLHH23 pKa = 6.78EE24 pKa = 4.79CYY26 pKa = 10.32EE27 pKa = 3.9NCKK30 pKa = 10.56DD31 pKa = 4.53DD32 pKa = 3.92EE33 pKa = 4.76CEE35 pKa = 4.44SICNMLYY42 pKa = 10.17EE43 pKa = 4.35EE44 pKa = 4.74RR45 pKa = 11.84SRR47 pKa = 11.84DD48 pKa = 3.69LEE50 pKa = 4.19FF51 pKa = 5.88

Molecular weight: 6.31 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3Q8Q418|A0A3Q8Q418_9VIRU Ribbon-helix-helix domain OS=Sulfolobales Beppu rod-shaped virus 1 OX=2493121 GN=SBRV1_gp41 PE=4 SV=1
MM1 pKa = 7.69AKK3 pKa = 10.1GHH5 pKa = 5.63TPRR8 pKa = 11.84SFAQRR13 pKa = 11.84YY14 pKa = 7.67AKK16 pKa = 10.06WSAKK20 pKa = 9.73FNAFSNPTVASTILGNVAPTAQQNFQTHH48 pKa = 4.36VTKK51 pKa = 9.8FTSVNEE57 pKa = 3.98QVNAVLTQYY66 pKa = 11.32GVTGPNRR73 pKa = 11.84AIYY76 pKa = 9.39QGYY79 pKa = 8.38GMKK82 pKa = 10.05VARR85 pKa = 11.84ALNRR89 pKa = 11.84LGQGSALANMIAGLKK104 pKa = 9.89AYY106 pKa = 9.66YY107 pKa = 10.07INAFNANPQILDD119 pKa = 3.32AVTNIITGSPTGYY132 pKa = 10.13ISS134 pKa = 3.26

Molecular weight: 14.39 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

56

0

56

9831

34

1064

175.6

20.51

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.109 ± 0.338

0.926 ± 0.171

4.547 ± 0.35

6.042 ± 0.52

6.093 ± 0.275

3.743 ± 0.233

1.424 ± 0.18

10.263 ± 0.423

8.229 ± 0.748

10.528 ± 0.546

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.116 ± 0.219

7.242 ± 0.517

3.052 ± 0.289

5.218 ± 0.455

2.899 ± 0.257

6.174 ± 0.447

4.76 ± 0.261

5.513 ± 0.257

0.844 ± 0.108

6.276 ± 0.259
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski