Corynebacterium alimapuense

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium

Average proteome isoelectric point is 5.73

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2040 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3M8K5W8|A0A3M8K5W8_9CORY SAF domain-containing protein OS=Corynebacterium alimapuense OX=1576874 GN=C5L39_08930 PE=4 SV=1
MM1 pKa = 7.93TYY3 pKa = 10.67RR4 pKa = 11.84KK5 pKa = 7.71TLGVLTATTLALSLVACSDD24 pKa = 3.95SEE26 pKa = 4.35GDD28 pKa = 3.85SSATGDD34 pKa = 3.6GSDD37 pKa = 3.28GGNYY41 pKa = 9.4VLANGSEE48 pKa = 4.18PQNPLIPANTNEE60 pKa = 4.07VGGGNIIDD68 pKa = 5.35LIFSGLVYY76 pKa = 10.61YY77 pKa = 10.69DD78 pKa = 3.84ADD80 pKa = 3.94GEE82 pKa = 4.38IHH84 pKa = 6.53NEE86 pKa = 3.76VAEE89 pKa = 4.41SIEE92 pKa = 4.07LEE94 pKa = 3.81GDD96 pKa = 2.74KK97 pKa = 10.45TYY99 pKa = 10.99RR100 pKa = 11.84VVLQDD105 pKa = 2.51GWTFNDD111 pKa = 4.23GSAVTADD118 pKa = 3.35SFVNAWNYY126 pKa = 10.43AVANSQLSSYY136 pKa = 10.16FFEE139 pKa = 5.83PILGYY144 pKa = 10.4EE145 pKa = 4.21EE146 pKa = 5.33GVEE149 pKa = 4.15SMEE152 pKa = 4.09GLTVIDD158 pKa = 4.27DD159 pKa = 3.79TTFTIEE165 pKa = 4.89LIEE168 pKa = 4.28PQADD172 pKa = 3.51FPTRR176 pKa = 11.84LGYY179 pKa = 10.24SAFYY183 pKa = 9.44PLPEE187 pKa = 4.0EE188 pKa = 5.25AFDD191 pKa = 4.62DD192 pKa = 3.78MAAFGEE198 pKa = 4.68TPNGNGPYY206 pKa = 10.2KK207 pKa = 10.44LSEE210 pKa = 3.99WNHH213 pKa = 5.25NQDD216 pKa = 3.02ATIVPSEE223 pKa = 4.24TYY225 pKa = 9.65EE226 pKa = 4.37GQRR229 pKa = 11.84TPQNDD234 pKa = 3.25GVKK237 pKa = 10.11FVFYY241 pKa = 10.21AQQDD245 pKa = 3.29AAYY248 pKa = 10.25NDD250 pKa = 4.23LLAGNLDD257 pKa = 3.9TLDD260 pKa = 5.46AIPDD264 pKa = 3.65SAFATFNEE272 pKa = 4.25EE273 pKa = 4.02LGDD276 pKa = 3.74RR277 pKa = 11.84AVNQPAAVFQSFTIPMEE294 pKa = 4.22AEE296 pKa = 3.96HH297 pKa = 6.8FSGEE301 pKa = 4.01EE302 pKa = 3.91GQLRR306 pKa = 11.84RR307 pKa = 11.84QALSLAINRR316 pKa = 11.84EE317 pKa = 4.34EE318 pKa = 3.6ITEE321 pKa = 4.45TIFQDD326 pKa = 3.14TRR328 pKa = 11.84TPASEE333 pKa = 3.89FTTPVLPGFDD343 pKa = 4.41DD344 pKa = 5.59EE345 pKa = 5.08IPGSEE350 pKa = 4.13VLDD353 pKa = 4.01YY354 pKa = 11.25DD355 pKa = 4.04PEE357 pKa = 4.34LANEE361 pKa = 4.63LWAQADD367 pKa = 4.67EE368 pKa = 4.19IDD370 pKa = 3.77PWSGEE375 pKa = 3.78FTLSYY380 pKa = 10.58NADD383 pKa = 3.71GGHH386 pKa = 6.65DD387 pKa = 3.11AWVNAVTNSIKK398 pKa = 9.68NTLGIEE404 pKa = 4.63AIGNPYY410 pKa = 10.09PDD412 pKa = 4.23FKK414 pKa = 11.17SLRR417 pKa = 11.84DD418 pKa = 3.62DD419 pKa = 3.41VTNRR423 pKa = 11.84TIEE426 pKa = 3.98GAFRR430 pKa = 11.84TGWQADD436 pKa = 3.95YY437 pKa = 10.05PSQGNFLGPLYY448 pKa = 10.0GTGAGSNDD456 pKa = 3.04GDD458 pKa = 3.81YY459 pKa = 11.48SNPEE463 pKa = 3.42FDD465 pKa = 5.1AKK467 pKa = 10.81LSEE470 pKa = 4.57ANSASSTEE478 pKa = 3.84EE479 pKa = 3.28SSRR482 pKa = 11.84IFNEE486 pKa = 3.78SQEE489 pKa = 4.26ILLSDD494 pKa = 5.0LPATPLWYY502 pKa = 10.78SNVAGGFSEE511 pKa = 5.09NVDD514 pKa = 2.97NVVFSWKK521 pKa = 10.01SVPVYY526 pKa = 10.54YY527 pKa = 10.45EE528 pKa = 3.38ITKK531 pKa = 10.19QQ532 pKa = 3.2

Molecular weight: 57.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3M8K5L2|A0A3M8K5L2_9CORY Non-specific serine/threonine protein kinase OS=Corynebacterium alimapuense OX=1576874 GN=pknB PE=4 SV=1
MM1 pKa = 7.69AKK3 pKa = 10.06GKK5 pKa = 8.69RR6 pKa = 11.84TFQPNNRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84ARR17 pKa = 11.84VHH19 pKa = 5.97GFRR22 pKa = 11.84TRR24 pKa = 11.84MSTRR28 pKa = 11.84AGRR31 pKa = 11.84AIVSARR37 pKa = 11.84RR38 pKa = 11.84RR39 pKa = 11.84KK40 pKa = 9.73GRR42 pKa = 11.84AKK44 pKa = 9.63LTAA47 pKa = 4.21

Molecular weight: 5.44 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2040

0

2040

679389

33

3023

333.0

36.0

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.448 ± 0.07

0.653 ± 0.014

6.005 ± 0.047

6.369 ± 0.049

3.245 ± 0.029

8.373 ± 0.047

2.095 ± 0.026

5.368 ± 0.04

2.687 ± 0.041

10.155 ± 0.059

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.185 ± 0.023

2.697 ± 0.031

4.976 ± 0.037

3.432 ± 0.03

6.164 ± 0.059

6.46 ± 0.043

6.012 ± 0.039

8.162 ± 0.047

1.412 ± 0.026

2.104 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski