Fundicoccus ignavus

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Aerococcaceae; Fundicoccus

Average proteome isoelectric point is 5.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2258 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6I2GPF8|A0A6I2GPF8_9LACT Uncharacterized protein OS=Fundicoccus ignavus OX=2664442 GN=GIY09_05520 PE=4 SV=1
MM1 pKa = 7.82KK2 pKa = 10.24KK3 pKa = 10.26RR4 pKa = 11.84LILTGLTLLALGGILPSTHH23 pKa = 5.64SVYY26 pKa = 11.0AEE28 pKa = 3.87EE29 pKa = 4.55LVSDD33 pKa = 3.58VTLNVGILPAEE44 pKa = 3.99SAIPIIIAKK53 pKa = 9.37EE54 pKa = 3.74NGYY57 pKa = 10.44FEE59 pKa = 5.81ALGLDD64 pKa = 3.75VDD66 pKa = 3.96IHH68 pKa = 5.84TFAAPTDD75 pKa = 3.81RR76 pKa = 11.84NIAIQAKK83 pKa = 9.65EE84 pKa = 4.08LDD86 pKa = 3.49ATIADD91 pKa = 3.97VMTEE95 pKa = 3.83ATFKK99 pKa = 11.15QNGIDD104 pKa = 3.63MVITSDD110 pKa = 3.1ILEE113 pKa = 4.52DD114 pKa = 4.16FKK116 pKa = 11.92VLASPNSGVTEE127 pKa = 4.05MEE129 pKa = 3.83EE130 pKa = 4.86LADD133 pKa = 4.45KK134 pKa = 10.98DD135 pKa = 3.32ITLVPNFILEE145 pKa = 4.43YY146 pKa = 10.72IMDD149 pKa = 4.24VYY151 pKa = 10.61ATEE154 pKa = 5.2GNFTYY159 pKa = 10.72NIVEE163 pKa = 4.03ITSFSARR170 pKa = 11.84SEE172 pKa = 4.02ALLNDD177 pKa = 3.55QVDD180 pKa = 3.5AAVYY184 pKa = 8.47TEE186 pKa = 4.6PQASMLVAQGAINLGSSADD205 pKa = 3.58AGIKK209 pKa = 10.43GGTIQFMADD218 pKa = 3.04VVAEE222 pKa = 4.34RR223 pKa = 11.84PQDD226 pKa = 3.07ISAFYY231 pKa = 9.8QAYY234 pKa = 9.16NQAIDD239 pKa = 3.66YY240 pKa = 9.25MNEE243 pKa = 3.45NSAASYY249 pKa = 11.57AEE251 pKa = 3.75VLSNYY256 pKa = 7.31EE257 pKa = 3.91FPEE260 pKa = 4.25AMSTYY265 pKa = 10.49LDD267 pKa = 4.07SKK269 pKa = 10.4EE270 pKa = 3.85VAYY273 pKa = 9.05PYY275 pKa = 10.72AQAVPQDD282 pKa = 3.41QFDD285 pKa = 4.98NIIEE289 pKa = 4.22WTVSKK294 pKa = 10.8GQIDD298 pKa = 3.46TAYY301 pKa = 9.72TYY303 pKa = 11.25DD304 pKa = 3.65EE305 pKa = 4.3LTNFTFLTEE314 pKa = 3.94

Molecular weight: 34.33 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6I2GNS9|A0A6I2GNS9_9LACT CBS domain-containing protein OS=Fundicoccus ignavus OX=2664442 GN=GIY09_09810 PE=4 SV=1
MM1 pKa = 7.36KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 9.67QPKK8 pKa = 9.36KK9 pKa = 7.48RR10 pKa = 11.84TRR12 pKa = 11.84KK13 pKa = 9.06KK14 pKa = 8.41VHH16 pKa = 5.85GFRR19 pKa = 11.84KK20 pKa = 10.01RR21 pKa = 11.84MSTKK25 pKa = 10.02NGRR28 pKa = 11.84NVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84LKK37 pKa = 10.59GRR39 pKa = 11.84KK40 pKa = 8.94KK41 pKa = 9.83IAAA44 pKa = 3.97

Molecular weight: 5.34 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2258

0

2258

718277

14

3562

318.1

35.64

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.709 ± 0.053

0.484 ± 0.012

5.576 ± 0.039

7.601 ± 0.06

4.39 ± 0.041

6.386 ± 0.047

1.976 ± 0.026

7.661 ± 0.051

5.416 ± 0.044

9.986 ± 0.061

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.618 ± 0.023

4.793 ± 0.038

3.404 ± 0.028

4.297 ± 0.042

3.948 ± 0.038

6.119 ± 0.04

5.8 ± 0.045

7.13 ± 0.044

0.913 ± 0.017

3.794 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski