Aliidiomarina taiwanensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Idiomarinaceae; Aliidiomarina

Average proteome isoelectric point is 6.21

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2309 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A432X9L8|A0A432X9L8_9GAMM 50S ribosomal protein L35 OS=Aliidiomarina taiwanensis OX=946228 GN=rpmI PE=3 SV=1
MM1 pKa = 7.44TKK3 pKa = 10.29FNQTAFSLVLAGVLVSGAAFSQTRR27 pKa = 11.84VASSQPNWRR36 pKa = 11.84ADD38 pKa = 3.38ALFEE42 pKa = 4.3TVTLSEE48 pKa = 4.93GFTPDD53 pKa = 2.68PWSYY57 pKa = 11.47DD58 pKa = 3.56LQAGGQNQATRR69 pKa = 11.84LGDD72 pKa = 3.42EE73 pKa = 4.12CSGYY77 pKa = 10.5INNSAPDD84 pKa = 3.22VTLIYY89 pKa = 10.39EE90 pKa = 4.56GGSILDD96 pKa = 3.31LHH98 pKa = 7.13LYY100 pKa = 7.34VTSNEE105 pKa = 3.98DD106 pKa = 3.04TTLVVSGPDD115 pKa = 4.14GRR117 pKa = 11.84WHH119 pKa = 6.97CNDD122 pKa = 4.28DD123 pKa = 4.34AMGLNPMIIFEE134 pKa = 4.34QPDD137 pKa = 3.23GGQYY141 pKa = 10.27DD142 pKa = 3.31IWVGVYY148 pKa = 10.24GSGDD152 pKa = 3.25IVPATLHH159 pKa = 6.03ISEE162 pKa = 5.47LNPMDD167 pKa = 3.54

Molecular weight: 18.01 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A432X8H3|A0A432X8H3_9GAMM ATP synthase subunit b OS=Aliidiomarina taiwanensis OX=946228 GN=atpF PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVIKK11 pKa = 10.49RR12 pKa = 11.84KK13 pKa = 9.2RR14 pKa = 11.84DD15 pKa = 3.06HH16 pKa = 6.58GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.37NGRR28 pKa = 11.84KK29 pKa = 8.96VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.94GRR39 pKa = 11.84KK40 pKa = 8.67VLSAA44 pKa = 4.05

Molecular weight: 5.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2309

0

2309

771387

37

2406

334.1

37.05

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.787 ± 0.053

0.858 ± 0.015

5.046 ± 0.04

6.578 ± 0.053

3.96 ± 0.033

7.011 ± 0.046

2.481 ± 0.027

5.412 ± 0.036

4.096 ± 0.046

10.629 ± 0.07

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.529 ± 0.022

3.635 ± 0.033

4.367 ± 0.034

5.065 ± 0.046

5.544 ± 0.039

6.037 ± 0.035

5.401 ± 0.037

7.3 ± 0.042

1.329 ± 0.022

2.936 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski