Acidovorax sp. HDW3

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax; unclassified Acidovorax

Average proteome isoelectric point is 6.95

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2817 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6G8AFS6|A0A6G8AFS6_9BURK DUF488 family protein OS=Acidovorax sp. HDW3 OX=2714923 GN=G7045_05880 PE=4 SV=1
MM1 pKa = 6.34STEE4 pKa = 3.89YY5 pKa = 10.9VIVVTGSIVSEE16 pKa = 4.18YY17 pKa = 10.51YY18 pKa = 10.07PEE20 pKa = 4.39LKK22 pKa = 10.31RR23 pKa = 11.84ILISVQKK30 pKa = 10.24RR31 pKa = 11.84SAPYY35 pKa = 9.72VIEE38 pKa = 4.37GMFAEE43 pKa = 4.88FGEE46 pKa = 4.61VADD49 pKa = 4.66GLFSALLDD57 pKa = 3.61DD58 pKa = 4.39HH59 pKa = 7.12LGLFFSLIEE68 pKa = 4.0VSEE71 pKa = 4.51TNGDD75 pKa = 4.16FRR77 pKa = 11.84WGWEE81 pKa = 4.35GYY83 pKa = 10.33GYY85 pKa = 11.07AEE87 pKa = 5.39SFLQDD92 pKa = 3.32VLQLFDD98 pKa = 5.79LFGLQNLKK106 pKa = 11.1GEE108 pKa = 4.43VYY110 pKa = 10.62GDD112 pKa = 3.44EE113 pKa = 4.3EE114 pKa = 4.66IYY116 pKa = 10.73RR117 pKa = 11.84CIVTADD123 pKa = 4.22SIDD126 pKa = 3.61CEE128 pKa = 4.39YY129 pKa = 11.37VEE131 pKa = 4.71RR132 pKa = 5.85

Molecular weight: 15.04 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6G8AK44|A0A6G8AK44_9BURK Nucleotidyltransferase family protein OS=Acidovorax sp. HDW3 OX=2714923 GN=G7045_14295 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.25QPSKK9 pKa = 7.79TRR11 pKa = 11.84RR12 pKa = 11.84ARR14 pKa = 11.84THH16 pKa = 5.79GFLVRR21 pKa = 11.84MKK23 pKa = 9.4TKK25 pKa = 10.4GGRR28 pKa = 11.84AVINARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.58GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2817

0

2817

951781

32

2129

337.9

36.68

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.626 ± 0.074

0.974 ± 0.014

4.873 ± 0.034

5.106 ± 0.046

3.284 ± 0.032

8.045 ± 0.045

2.393 ± 0.022

4.074 ± 0.039

3.094 ± 0.052

11.559 ± 0.073

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.279 ± 0.023

2.461 ± 0.03

5.332 ± 0.036

5.441 ± 0.052

6.676 ± 0.041

5.049 ± 0.031

4.838 ± 0.031

7.092 ± 0.041

1.569 ± 0.022

2.235 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski