Daejeonella lutea

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Daejeonella

Average proteome isoelectric point is 6.85

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3561 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1T5A1N8|A0A1T5A1N8_9SPHI TonB dependent receptor OS=Daejeonella lutea OX=572036 GN=SAMN05661099_0211 PE=4 SV=1
MM1 pKa = 7.63KK2 pKa = 10.47EE3 pKa = 3.46NDD5 pKa = 3.95FYY7 pKa = 11.66LSTEE11 pKa = 3.57IKK13 pKa = 10.34YY14 pKa = 10.71NCLDD18 pKa = 3.68VVKK21 pKa = 9.83MWGTDD26 pKa = 3.77FEE28 pKa = 5.18LKK30 pKa = 10.52VYY32 pKa = 10.86SLTDD36 pKa = 2.9TDD38 pKa = 4.64YY39 pKa = 11.43EE40 pKa = 4.23VAEE43 pKa = 4.33NCIEE47 pKa = 4.15LYY49 pKa = 10.74GDD51 pKa = 3.95SRR53 pKa = 11.84PDD55 pKa = 3.35LYY57 pKa = 11.36AFEE60 pKa = 4.85VSLDD64 pKa = 3.78DD65 pKa = 4.09EE66 pKa = 4.75LSYY69 pKa = 11.28DD70 pKa = 3.84YY71 pKa = 11.03MNDD74 pKa = 3.51AITWYY79 pKa = 9.83ASHH82 pKa = 7.02IGKK85 pKa = 9.24PDD87 pKa = 3.43MEE89 pKa = 4.75ILRR92 pKa = 11.84TDD94 pKa = 3.12PRR96 pKa = 11.84EE97 pKa = 4.13DD98 pKa = 3.49FLEE101 pKa = 4.93GSLPKK106 pKa = 10.66VGII109 pKa = 4.09

Molecular weight: 12.73 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1T5ARF0|A0A1T5ARF0_9SPHI 2'-5' RNA ligase OS=Daejeonella lutea OX=572036 GN=SAMN05661099_0951 PE=4 SV=1
MM1 pKa = 7.63RR2 pKa = 11.84FSFIVLRR9 pKa = 11.84KK10 pKa = 8.63NRR12 pKa = 11.84KK13 pKa = 7.79FLRR16 pKa = 11.84LLFASASLFVRR27 pKa = 11.84FRR29 pKa = 11.84FAFCSLCFRR38 pKa = 11.84VCSEE42 pKa = 3.83TASYY46 pKa = 11.01LLRR49 pKa = 11.84DD50 pKa = 3.78RR51 pKa = 11.84FGKK54 pKa = 10.31ASCIFRR60 pKa = 11.84LFFGRR65 pKa = 11.84KK66 pKa = 6.61FNRR69 pKa = 11.84VSTDD73 pKa = 3.43FVYY76 pKa = 10.96SSVPVLRR83 pKa = 11.84GNAGYY88 pKa = 7.92RR89 pKa = 11.84TASEE93 pKa = 4.48GDD95 pKa = 3.5LKK97 pKa = 11.02NCRR100 pKa = 11.84IRR102 pKa = 11.84LGVGNNLISITYY114 pKa = 9.9DD115 pKa = 2.96KK116 pKa = 10.79RR117 pKa = 11.84SKK119 pKa = 10.86NDD121 pKa = 3.18QILVSRR127 pKa = 11.84KK128 pKa = 7.32TLSQSYY134 pKa = 10.41LSDD137 pKa = 3.8NFRR140 pKa = 11.84QDD142 pKa = 2.61IKK144 pKa = 10.95CQEE147 pKa = 4.07KK148 pKa = 10.85LPTGVLLKK156 pKa = 10.82AILYY160 pKa = 8.71LII162 pKa = 4.6

Molecular weight: 18.79 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3561

0

3561

1196146

38

3472

335.9

37.56

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.285 ± 0.038

0.762 ± 0.015

5.416 ± 0.025

5.85 ± 0.044

4.957 ± 0.03

7.038 ± 0.041

1.779 ± 0.019

7.438 ± 0.035

6.909 ± 0.036

9.426 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.362 ± 0.02

5.43 ± 0.039

3.896 ± 0.029

3.376 ± 0.023

4.253 ± 0.026

6.888 ± 0.032

5.607 ± 0.05

6.437 ± 0.03

1.097 ± 0.015

3.795 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski