Okra yellow vein disease associated sequence

Taxonomy: Viruses; Tolecusatellitidae; Betasatellite; unclassified Betasatellite

Average proteome isoelectric point is 5.51

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q7T471|Q7T471_9VIRU Putative C1 protein OS=Okra yellow vein disease associated sequence OX=169693 GN=C1 PE=4 SV=1
MM1 pKa = 7.77TITLRR6 pKa = 11.84NTKK9 pKa = 9.41GVHH12 pKa = 4.93FRR14 pKa = 11.84VDD16 pKa = 3.16VFLKK20 pKa = 10.47DD21 pKa = 3.52DD22 pKa = 5.19HH23 pKa = 7.24IDD25 pKa = 3.6CKK27 pKa = 10.88IEE29 pKa = 3.77VTATKK34 pKa = 10.27EE35 pKa = 3.83SYY37 pKa = 9.89LRR39 pKa = 11.84KK40 pKa = 8.41STFIIPYY47 pKa = 8.72HH48 pKa = 5.87FADD51 pKa = 3.56VFIPFDD57 pKa = 4.02FNGSEE62 pKa = 4.13EE63 pKa = 4.54EE64 pKa = 4.1IMHH67 pKa = 6.97GLRR70 pKa = 11.84NMFKK74 pKa = 9.9DD75 pKa = 3.47TTHH78 pKa = 6.42QMIRR82 pKa = 11.84TEE84 pKa = 4.0EE85 pKa = 4.03LVDD88 pKa = 3.8VVDD91 pKa = 4.39MVMAEE96 pKa = 4.1NVNVLGMEE104 pKa = 5.24LINHH108 pKa = 5.25YY109 pKa = 10.51RR110 pKa = 11.84IINKK114 pKa = 9.97SSVV117 pKa = 2.84

Molecular weight: 13.7 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q7T471|Q7T471_9VIRU Putative C1 protein OS=Okra yellow vein disease associated sequence OX=169693 GN=C1 PE=4 SV=1
MM1 pKa = 7.77TITLRR6 pKa = 11.84NTKK9 pKa = 9.41GVHH12 pKa = 4.93FRR14 pKa = 11.84VDD16 pKa = 3.16VFLKK20 pKa = 10.47DD21 pKa = 3.52DD22 pKa = 5.19HH23 pKa = 7.24IDD25 pKa = 3.6CKK27 pKa = 10.88IEE29 pKa = 3.77VTATKK34 pKa = 10.27EE35 pKa = 3.83SYY37 pKa = 9.89LRR39 pKa = 11.84KK40 pKa = 8.41STFIIPYY47 pKa = 8.72HH48 pKa = 5.87FADD51 pKa = 3.56VFIPFDD57 pKa = 4.02FNGSEE62 pKa = 4.13EE63 pKa = 4.54EE64 pKa = 4.1IMHH67 pKa = 6.97GLRR70 pKa = 11.84NMFKK74 pKa = 9.9DD75 pKa = 3.47TTHH78 pKa = 6.42QMIRR82 pKa = 11.84TEE84 pKa = 4.0EE85 pKa = 4.03LVDD88 pKa = 3.8VVDD91 pKa = 4.39MVMAEE96 pKa = 4.1NVNVLGMEE104 pKa = 5.24LINHH108 pKa = 5.25YY109 pKa = 10.51RR110 pKa = 11.84IINKK114 pKa = 9.97SSVV117 pKa = 2.84

Molecular weight: 13.7 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

117

117

117

117.0

13.7

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

2.564 ± 0.0

0.855 ± 0.0

7.692 ± 0.0

7.692 ± 0.0

6.838 ± 0.0

3.419 ± 0.0

5.128 ± 0.0

9.402 ± 0.0

5.983 ± 0.0

5.983 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

5.983 ± 0.0

5.983 ± 0.0

1.709 ± 0.0

0.855 ± 0.0

5.128 ± 0.0

4.274 ± 0.0

7.692 ± 0.0

10.256 ± 0.0

0.0 ± 0.0

2.564 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski