Glypta fumiferanae ichnovirus

Taxonomy: Viruses; Polydnaviridae; Ichnovirus

Average proteome isoelectric point is 7.41

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 101 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A2PZV3|A2PZV3_9VIRU GfV-B56-ORF1 OS=Glypta fumiferanae ichnovirus OX=419435 PE=4 SV=1
MM1 pKa = 7.91EE2 pKa = 5.8IFPMDD7 pKa = 3.9GLFKK11 pKa = 10.88KK12 pKa = 9.33NTMGNNIFHH21 pKa = 7.42EE22 pKa = 4.23IAIEE26 pKa = 4.41GSLLMLRR33 pKa = 11.84RR34 pKa = 11.84IRR36 pKa = 11.84DD37 pKa = 3.68NVNEE41 pKa = 3.94QMDD44 pKa = 4.48TYY46 pKa = 11.39LSDD49 pKa = 3.59TNDD52 pKa = 3.21QGEE55 pKa = 4.45TCIVIAADD63 pKa = 3.55RR64 pKa = 11.84HH65 pKa = 5.67RR66 pKa = 11.84GRR68 pKa = 11.84LAIEE72 pKa = 4.68LIEE75 pKa = 4.22IFVGLGADD83 pKa = 3.79INGTDD88 pKa = 3.79NEE90 pKa = 4.81GNTALHH96 pKa = 4.61YY97 pKa = 9.52TVFNEE102 pKa = 3.84DD103 pKa = 3.09HH104 pKa = 7.08ALASWLYY111 pKa = 7.54QQPGINLNAANHH123 pKa = 7.0DD124 pKa = 3.95EE125 pKa = 4.2LTPLGLAIQLNIQGMKK141 pKa = 10.61AFLDD145 pKa = 3.76FLEE148 pKa = 4.39AARR151 pKa = 11.84AVLIEE156 pKa = 4.46WNDD159 pKa = 3.45SDD161 pKa = 6.55DD162 pKa = 6.05DD163 pKa = 6.41DD164 pKa = 7.31DD165 pKa = 7.37DD166 pKa = 6.2EE167 pKa = 8.11DD168 pKa = 6.77DD169 pKa = 6.01DD170 pKa = 7.22DD171 pKa = 7.34DD172 pKa = 4.91DD173 pKa = 4.86VSTRR177 pKa = 11.84RR178 pKa = 11.84HH179 pKa = 4.64GG180 pKa = 3.36

Molecular weight: 20.22 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A2PZR5|A2PZR5_9VIRU GfV-B16-ORF1 OS=Glypta fumiferanae ichnovirus OX=419435 PE=4 SV=1
MM1 pKa = 7.51KK2 pKa = 10.14LHH4 pKa = 6.06VFIAINEE11 pKa = 4.22LDD13 pKa = 3.64VKK15 pKa = 10.23FWIRR19 pKa = 11.84NTPKK23 pKa = 10.66LSLKK27 pKa = 9.58CTEE30 pKa = 3.9TRR32 pKa = 11.84NWLWTNHH39 pKa = 5.34KK40 pKa = 9.73LANNRR45 pKa = 11.84QEE47 pKa = 3.76ITIPMSLRR55 pKa = 11.84LLDD58 pKa = 3.56KK59 pKa = 11.27SRR61 pKa = 11.84DD62 pKa = 3.61QNVFLVLSPTIEE74 pKa = 4.11SPRR77 pKa = 11.84LGLSISLRR85 pKa = 11.84LRR87 pKa = 11.84LRR89 pKa = 11.84LTLMVNSFPNQLVNFGQCVYY109 pKa = 11.22

Molecular weight: 12.82 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

101

0

101

20567

77

972

203.6

23.63

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.439 ± 0.18

2.854 ± 0.286

5.271 ± 0.203

5.844 ± 0.174

4.906 ± 0.157

3.476 ± 0.142

2.694 ± 0.133

8.008 ± 0.179

7.133 ± 0.302

8.587 ± 0.237

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.049 ± 0.126

6.316 ± 0.168

3.423 ± 0.131

3.214 ± 0.148

5.771 ± 0.158

7.405 ± 0.246

5.543 ± 0.181

6.685 ± 0.302

1.332 ± 0.071

4.05 ± 0.117
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski