Gordonia aichiensis NBRC 108223

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Gordoniaceae; Gordonia; Gordonia aichiensis

Average proteome isoelectric point is 5.92

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4613 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|L7KSF6|L7KSF6_9ACTN Uncharacterized protein OS=Gordonia aichiensis NBRC 108223 OX=1220583 GN=GOACH_33_00130 PE=4 SV=1
MM1 pKa = 7.4SADD4 pKa = 4.21DD5 pKa = 5.55DD6 pKa = 5.18SILTALGISPDD17 pKa = 3.97DD18 pKa = 3.82VQAPPAGVFEE28 pKa = 4.84HH29 pKa = 6.77ALSDD33 pKa = 3.84AFASDD38 pKa = 3.94APADD42 pKa = 4.18DD43 pKa = 3.7STVPVMDD50 pKa = 5.68DD51 pKa = 3.5EE52 pKa = 4.77PAVPDD57 pKa = 4.48DD58 pKa = 5.02DD59 pKa = 5.78LVVDD63 pKa = 5.08DD64 pKa = 5.34GVHH67 pKa = 6.75HH68 pKa = 6.76EE69 pKa = 5.01GPDD72 pKa = 3.33EE73 pKa = 4.19GHH75 pKa = 7.56DD76 pKa = 3.74GGTDD80 pKa = 3.26HH81 pKa = 7.66DD82 pKa = 4.94GDD84 pKa = 5.71AIPADD89 pKa = 3.62PAVLHH94 pKa = 6.71GNDD97 pKa = 5.06DD98 pKa = 3.43PTLQHH103 pKa = 7.14DD104 pKa = 4.2EE105 pKa = 4.08ASGGHH110 pKa = 5.6EE111 pKa = 4.49VDD113 pKa = 5.77LADD116 pKa = 5.16HH117 pKa = 7.79DD118 pKa = 4.96YY119 pKa = 11.55GDD121 pKa = 4.08HH122 pKa = 7.27DD123 pKa = 4.49GSGFHH128 pKa = 7.72DD129 pKa = 4.12GGDD132 pKa = 3.52YY133 pKa = 10.99HH134 pKa = 7.63LL135 pKa = 5.39

Molecular weight: 13.91 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|L7KM77|L7KM77_9ACTN Mce family protein OS=Gordonia aichiensis NBRC 108223 OX=1220583 GN=mceA PE=4 SV=1
MM1 pKa = 7.69AKK3 pKa = 10.06GKK5 pKa = 8.69RR6 pKa = 11.84TFQPNNRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84ARR17 pKa = 11.84VHH19 pKa = 5.99GFRR22 pKa = 11.84LRR24 pKa = 11.84MRR26 pKa = 11.84TRR28 pKa = 11.84AGRR31 pKa = 11.84SIINTRR37 pKa = 11.84RR38 pKa = 11.84SKK40 pKa = 10.92GRR42 pKa = 11.84AKK44 pKa = 10.73LSAA47 pKa = 3.92

Molecular weight: 5.52 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4613

0

4613

1538364

44

10958

333.5

35.8

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.521 ± 0.048

0.765 ± 0.01

6.896 ± 0.031

5.208 ± 0.032

2.985 ± 0.02

8.721 ± 0.031

2.217 ± 0.016

4.562 ± 0.023

2.144 ± 0.032

9.39 ± 0.04

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.992 ± 0.014

2.17 ± 0.019

5.441 ± 0.029

2.758 ± 0.017

7.328 ± 0.034

6.108 ± 0.026

6.428 ± 0.026

8.85 ± 0.036

1.428 ± 0.015

2.087 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski