Canis familiaris papillomavirus 8

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Chipapillomavirus; Chipapillomavirus 3

Average proteome isoelectric point is 6.33

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G3DRD9|G3DRD9_9PAPI Replication protein E1 OS=Canis familiaris papillomavirus 8 OX=1081055 GN=E1 PE=3 SV=1
MM1 pKa = 7.39IGKK4 pKa = 9.27DD5 pKa = 2.95ATLRR9 pKa = 11.84DD10 pKa = 3.45IVLEE14 pKa = 4.07EE15 pKa = 4.11EE16 pKa = 4.49QPCPVDD22 pKa = 5.48DD23 pKa = 5.15LYY25 pKa = 11.53CDD27 pKa = 3.72EE28 pKa = 4.87EE29 pKa = 4.51LPPEE33 pKa = 4.26EE34 pKa = 4.28EE35 pKa = 4.15EE36 pKa = 3.89EE37 pKa = 4.6AEE39 pKa = 4.98RR40 pKa = 11.84EE41 pKa = 4.27LQSFAPYY48 pKa = 10.0RR49 pKa = 11.84IQAHH53 pKa = 6.52CGHH56 pKa = 7.06CEE58 pKa = 3.49RR59 pKa = 11.84PIRR62 pKa = 11.84LVVLSTRR69 pKa = 11.84DD70 pKa = 3.73GIISLEE76 pKa = 4.0EE77 pKa = 4.18LLTSCLDD84 pKa = 3.92LCCPDD89 pKa = 3.48CASRR93 pKa = 11.84RR94 pKa = 11.84WRR96 pKa = 11.84FGRR99 pKa = 11.84AQHH102 pKa = 6.55GGG104 pKa = 3.34

Molecular weight: 11.87 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G3DRE2|G3DRE2_9PAPI Minor capsid protein L2 OS=Canis familiaris papillomavirus 8 OX=1081055 GN=L2 PE=3 SV=1
MM1 pKa = 7.02QRR3 pKa = 11.84DD4 pKa = 3.48IVLRR8 pKa = 11.84EE9 pKa = 3.74YY10 pKa = 11.39GRR12 pKa = 11.84LCITMRR18 pKa = 11.84PFHH21 pKa = 6.6LAILLLALHH30 pKa = 7.03RR31 pKa = 11.84PPTLVEE37 pKa = 3.77RR38 pKa = 11.84LNYY41 pKa = 9.79ILTGYY46 pKa = 8.52PPPNDD51 pKa = 3.25EE52 pKa = 4.75PEE54 pKa = 4.06TGEE57 pKa = 3.91RR58 pKa = 11.84SPARR62 pKa = 11.84GRR64 pKa = 11.84RR65 pKa = 11.84RR66 pKa = 11.84RR67 pKa = 11.84RR68 pKa = 11.84KK69 pKa = 9.1EE70 pKa = 3.77RR71 pKa = 11.84LSSPQFTPPHH81 pKa = 5.73TPPRR85 pKa = 11.84SPTALLTPPSPFPSLLGGFSDD106 pKa = 4.56PPSSQWEE113 pKa = 4.19LPPSQRR119 pKa = 11.84RR120 pKa = 11.84LAQGRR125 pKa = 11.84SRR127 pKa = 11.84GPTPPKK133 pKa = 9.97HH134 pKa = 6.5PEE136 pKa = 3.9SQRR139 pKa = 11.84SDD141 pKa = 3.58SPHH144 pKa = 7.14PPQQGPGPSASQRR157 pKa = 11.84IVSLPRR163 pKa = 11.84GVPRR167 pKa = 11.84SPRR170 pKa = 11.84TNPFWFPFTEE180 pKa = 4.41SVEE183 pKa = 4.23EE184 pKa = 4.17EE185 pKa = 4.44GTGLSVVRR193 pKa = 11.84GGGNNTPGPLRR204 pKa = 11.84SRR206 pKa = 11.84PQTPDD211 pKa = 2.13HH212 pKa = 7.22WDD214 pKa = 3.45PLPRR218 pKa = 11.84PEE220 pKa = 4.04EE221 pKa = 3.92VPRR224 pKa = 11.84RR225 pKa = 11.84RR226 pKa = 11.84RR227 pKa = 11.84RR228 pKa = 11.84PRR230 pKa = 11.84LQQQHH235 pKa = 5.92EE236 pKa = 4.39DD237 pKa = 3.45LRR239 pKa = 11.84LALQQLGRR247 pKa = 11.84DD248 pKa = 3.55AFQLRR253 pKa = 11.84EE254 pKa = 4.56DD255 pKa = 4.42IEE257 pKa = 4.45TDD259 pKa = 3.22LNTFFGKK266 pKa = 10.57LGIAPHH272 pKa = 6.65RR273 pKa = 11.84LL274 pKa = 3.19

Molecular weight: 31.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2680

104

625

382.9

42.47

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.53 ± 0.732

2.127 ± 0.569

6.194 ± 0.597

6.194 ± 0.553

3.993 ± 0.781

7.91 ± 0.503

2.313 ± 0.31

3.694 ± 0.57

3.843 ± 0.835

8.284 ± 0.86

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.642 ± 0.406

3.209 ± 0.751

8.582 ± 1.532

4.254 ± 0.529

7.612 ± 0.918

7.575 ± 0.487

6.269 ± 0.406

6.007 ± 1.019

1.567 ± 0.287

2.201 ± 0.225
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski