Rhodopirellula maiorica SM1

Taxonomy: cellular organisms; Bacteria; PVC group; Planctomycetes; Planctomycetia; Pirellulales; Pirellulaceae; Rhodopirellula; Rhodopirellula maiorica

Average proteome isoelectric point is 6.27

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7824 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    

Protein with the lowest isoelectric point:
>tr|M5R776|M5R776_9BACT Uncharacterized protein (Fragment) OS=Rhodopirellula maiorica SM1 OX=1265738 GN=RMSM_07745 PE=4 SV=1
SS1 pKa = 7.0GSGGLGDD8 pKa = 4.3DD9 pKa = 3.26AGIIKK14 pKa = 9.56FVNEE18 pKa = 3.88TSGTLTITNSTSGGGAGTRR37 pKa = 11.84YY38 pKa = 10.04LSTGAASTTDD48 pKa = 3.22PFTYY52 pKa = 10.07EE53 pKa = 4.03SVITHH58 pKa = 6.49PPIIEE63 pKa = 4.06NLGTITNQTTLTTQVAPEE81 pKa = 4.02IQNQGTLAINSGKK94 pKa = 10.35LVLQKK99 pKa = 10.59QFEE102 pKa = 4.43TSGDD106 pKa = 3.72VIIEE110 pKa = 4.15YY111 pKa = 10.33QSEE114 pKa = 4.36LNISGYY120 pKa = 10.46SGEE123 pKa = 4.75LSSDD127 pKa = 3.58PYY129 pKa = 11.45GGDD132 pKa = 3.43PYY134 pKa = 11.43GGDD137 pKa = 3.68PYY139 pKa = 11.4GGGSGSGSGSGGTVDD154 pKa = 3.45TRR156 pKa = 11.84ISYY159 pKa = 7.61TQTAGSTTINGGQLTATGDD178 pKa = 4.12AIIQAGSLSGIGLIGTDD195 pKa = 5.56LINQGQMTLAPGLGVLSVDD214 pKa = 3.76GDD216 pKa = 4.03FTQTSSGSLYY226 pKa = 10.92LDD228 pKa = 3.46ATSQPNHH235 pKa = 5.88QADD238 pKa = 3.66SLAVKK243 pKa = 10.4GKK245 pKa = 8.46VTLDD249 pKa = 2.92GDD251 pKa = 4.09FFLDD255 pKa = 3.29TTYY258 pKa = 11.1LISPPNMIHH267 pKa = 7.59LIDD270 pKa = 4.52NDD272 pKa = 3.74GSDD275 pKa = 4.28AIVGQFSNVDD285 pKa = 3.33EE286 pKa = 4.93GDD288 pKa = 3.42VTGIAGINQPFSYY301 pKa = 10.52EE302 pKa = 3.96GGTGNDD308 pKa = 3.22FTFGFRR314 pKa = 11.84LPSISVSNVKK324 pKa = 10.47LNEE327 pKa = 4.25GNSGVTDD334 pKa = 4.02FVFTVSLDD342 pKa = 3.44GGYY345 pKa = 10.31SSPVTVNYY353 pKa = 9.27STEE356 pKa = 4.26DD357 pKa = 3.49DD358 pKa = 3.7SALAGEE364 pKa = 5.2DD365 pKa = 3.99YY366 pKa = 10.75ISTSGTLTFYY376 pKa = 10.79PNDD379 pKa = 4.13PLSQTVTVSVIGDD392 pKa = 3.82LVPEE396 pKa = 3.91RR397 pKa = 11.84RR398 pKa = 11.84EE399 pKa = 3.92RR400 pKa = 11.84FSLVLTDD407 pKa = 3.49ATNSIVEE414 pKa = 4.22NGTGVGSIMDD424 pKa = 4.39DD425 pKa = 4.01DD426 pKa = 4.77GFSGAKK432 pKa = 10.16DD433 pKa = 3.52NLGDD437 pKa = 4.09EE438 pKa = 4.81FWLTFPANYY447 pKa = 7.7QTGDD451 pKa = 3.53QQDD454 pKa = 4.84LILFLTGPDD463 pKa = 3.51DD464 pKa = 5.16AIGNVEE470 pKa = 3.86ILGLSFSTTFEE481 pKa = 3.96VKK483 pKa = 10.41ANQITAISLPQGADD497 pKa = 2.73LGTAIDD503 pKa = 3.71QIEE506 pKa = 4.32NKK508 pKa = 9.77GIHH511 pKa = 5.55ITADD515 pKa = 3.23VEE517 pKa = 4.09IAVYY521 pKa = 10.38GLNLVTYY528 pKa = 9.68TSDD531 pKa = 3.25AYY533 pKa = 11.11LGLPVDD539 pKa = 4.18ILDD542 pKa = 4.22DD543 pKa = 4.34KK544 pKa = 11.58YY545 pKa = 11.91VVLGWKK551 pKa = 10.2NSGIGAGTQFAIVASEE567 pKa = 4.29DD568 pKa = 3.5NTLVTITPTAQVGARR583 pKa = 11.84QAGVSYY589 pKa = 10.45QIEE592 pKa = 4.29LDD594 pKa = 3.43AGQTYY599 pKa = 7.61QLRR602 pKa = 11.84NSDD605 pKa = 3.93YY606 pKa = 10.71PADD609 pKa = 3.82LSGSIVQADD618 pKa = 3.62APVAVFAGHH627 pKa = 6.26EE628 pKa = 4.23CANIPEE634 pKa = 4.43GVTYY638 pKa = 10.44CDD640 pKa = 3.5YY641 pKa = 11.18VVEE644 pKa = 4.23QLTPTSTWGKK654 pKa = 10.52DD655 pKa = 3.89FISVPLAARR664 pKa = 11.84QNGDD668 pKa = 3.4TFRR671 pKa = 11.84VIASEE676 pKa = 4.58DD677 pKa = 3.39DD678 pKa = 3.45TVIQVNGTVVATLDD692 pKa = 3.28AGEE695 pKa = 4.32IYY697 pKa = 10.71EE698 pKa = 5.72DD699 pKa = 3.14IFTTVSHH706 pKa = 6.81IEE708 pKa = 3.88SSQPILVAQHH718 pKa = 5.24SHH720 pKa = 5.81GSSFDD725 pKa = 3.44GALGDD730 pKa = 4.14PFMMMIAPTEE740 pKa = 4.01QFLDD744 pKa = 3.78NYY746 pKa = 10.11TVGTPVNATSTGYY759 pKa = 10.94SSTQFVDD766 pKa = 2.89NFLNIVIPSDD776 pKa = 4.39AIASLRR782 pKa = 11.84LDD784 pKa = 4.08GQPLDD789 pKa = 3.78AGIAFEE795 pKa = 4.2QVGMTGYY802 pKa = 9.98SGASIPVTTGSHH814 pKa = 6.25HH815 pKa = 7.11LSADD819 pKa = 3.39APFGVYY825 pKa = 9.17TYY827 pKa = 11.32GFNTDD832 pKa = 3.67DD833 pKa = 3.6SYY835 pKa = 12.01GYY837 pKa = 9.84PGGLALARR845 pKa = 11.84IADD848 pKa = 4.06VQTLALTPPEE858 pKa = 3.44QTAYY862 pKa = 9.5VNSMQSVSATIKK874 pKa = 10.17DD875 pKa = 3.66ANGVGIAGVRR885 pKa = 11.84VDD887 pKa = 4.44FVVSGANSITGSTFTNAFGVAEE909 pKa = 4.29FFYY912 pKa = 10.43TGTNVGDD919 pKa = 4.04DD920 pKa = 4.17SIVATFSSLTATAEE934 pKa = 4.31KK935 pKa = 9.21TWIAAAPAIEE945 pKa = 4.51ILSPAPFTDD954 pKa = 3.71YY955 pKa = 11.17TPGSGILITGKK966 pKa = 8.76ATAADD971 pKa = 3.66PSVPVVAVYY980 pKa = 10.02MDD982 pKa = 4.29GVPVDD987 pKa = 4.82ALDD990 pKa = 4.16ADD992 pKa = 3.99GKK994 pKa = 10.64FFVSTSVEE1002 pKa = 3.88AANQVYY1008 pKa = 10.45SFTAIDD1014 pKa = 3.52ALGNQATTTLTLDD1027 pKa = 3.29IFARR1031 pKa = 11.84SRR1033 pKa = 11.84GPINLSTLSDD1043 pKa = 3.68VSTIDD1048 pKa = 3.12ADD1050 pKa = 3.89YY1051 pKa = 10.96GITSFDD1057 pKa = 3.05FRR1059 pKa = 11.84TNKK1062 pKa = 10.14LYY1064 pKa = 11.08AEE1066 pKa = 4.43LSITNSGTYY1075 pKa = 10.23AINNPLLVGVKK1086 pKa = 9.65NISSATVFPSGYY1098 pKa = 10.77AGITADD1104 pKa = 4.93GIPYY1108 pKa = 9.76FDD1110 pKa = 4.43FSSFVTGDD1118 pKa = 3.17TLEE1121 pKa = 4.79PGEE1124 pKa = 4.25STLRR1128 pKa = 11.84GILQFDD1134 pKa = 3.59NPNRR1138 pKa = 11.84EE1139 pKa = 3.88TFTYY1143 pKa = 10.5EE1144 pKa = 4.49LVLLGQLNRR1153 pKa = 11.84APEE1156 pKa = 4.51FVSSPPVSVTSGTPYY1171 pKa = 10.26SYY1173 pKa = 10.98PVTAFDD1179 pKa = 4.56ADD1181 pKa = 3.42QDD1183 pKa = 4.08EE1184 pKa = 4.72IEE1186 pKa = 4.34YY1187 pKa = 10.91SLVAGPSGITLDD1199 pKa = 3.95SQTGALTWNPSTGDD1213 pKa = 3.49VGNHH1217 pKa = 5.98NLTIQADD1224 pKa = 3.94DD1225 pKa = 3.62GRR1227 pKa = 11.84GARR1230 pKa = 11.84TLQSFVLSVEE1240 pKa = 3.8ASTGNRR1246 pKa = 11.84PPVFTSVPVTTAYY1259 pKa = 10.81VGTEE1263 pKa = 3.89YY1264 pKa = 10.76QADD1267 pKa = 3.96VAVSDD1272 pKa = 4.45PDD1274 pKa = 3.85FDD1276 pKa = 4.36TVTLSLATAVAGLAVASTGDD1296 pKa = 3.49RR1297 pKa = 11.84SGQLTWTPTASQVGTHH1313 pKa = 7.53LITIEE1318 pKa = 4.55ADD1320 pKa = 3.16DD1321 pKa = 4.51SGAGGITEE1329 pKa = 4.01QSFMIRR1335 pKa = 11.84VLPAQGNSAPHH1346 pKa = 6.69ILSDD1350 pKa = 5.22PITTATAGVAYY1361 pKa = 9.99HH1362 pKa = 6.3YY1363 pKa = 10.64GLVAIDD1369 pKa = 4.95PDD1371 pKa = 5.03DD1372 pKa = 6.2DD1373 pKa = 4.22DD1374 pKa = 4.85LAYY1377 pKa = 9.29TLSSAPSGMTIDD1389 pKa = 5.12AEE1391 pKa = 4.38TGSINWTPTSGTSGTTEE1408 pKa = 3.58VTVRR1412 pKa = 11.84VDD1414 pKa = 4.93DD1415 pKa = 3.71GHH1417 pKa = 7.59GWFDD1421 pKa = 4.11EE1422 pKa = 4.5QTCDD1426 pKa = 4.87LAWINATPGTLSGTVFDD1443 pKa = 5.47DD1444 pKa = 3.44QDD1446 pKa = 4.47ADD1448 pKa = 4.24GIRR1451 pKa = 11.84DD1452 pKa = 3.51GGEE1455 pKa = 3.68PALSGWTVYY1464 pKa = 11.06LDD1466 pKa = 3.45ANRR1469 pKa = 11.84NNKK1472 pKa = 9.05PEE1474 pKa = 4.19SGEE1477 pKa = 4.19TNAVTNASGQYY1488 pKa = 10.51SFTNVPIGEE1497 pKa = 4.12YY1498 pKa = 10.04TIGIVKK1504 pKa = 10.1QPDD1507 pKa = 3.05WALNVPTTRR1516 pKa = 11.84VHH1518 pKa = 6.38TGTLSGGQTVSGLDD1532 pKa = 3.34FAFVTKK1538 pKa = 10.13TGGNAKK1544 pKa = 9.8PVFQSVPITTAVMGNTYY1561 pKa = 8.91QYY1563 pKa = 11.08RR1564 pKa = 11.84PTAFDD1569 pKa = 3.74ADD1571 pKa = 4.16GDD1573 pKa = 4.03EE1574 pKa = 4.5LTYY1577 pKa = 11.24SLAYY1581 pKa = 9.55GPRR1584 pKa = 11.84GMTIDD1589 pKa = 4.08PATGSLAWNPAEE1601 pKa = 5.28DD1602 pKa = 3.63EE1603 pKa = 4.13NFYY1606 pKa = 11.51VDD1608 pKa = 3.08VTLRR1612 pKa = 11.84VDD1614 pKa = 3.71DD1615 pKa = 4.61GNGGVALQPFQVFLTVAEE1633 pKa = 4.2NSAPVFTSQPHH1644 pKa = 5.74GPASVGVAWTYY1655 pKa = 10.53NASATDD1661 pKa = 3.85PDD1663 pKa = 4.7GDD1665 pKa = 4.12SVTYY1669 pKa = 10.9SLDD1672 pKa = 3.53NEE1674 pKa = 4.32SLARR1678 pKa = 11.84GIVIHH1683 pKa = 5.98STTGAVTWTPTAVGDD1698 pKa = 3.58YY1699 pKa = 8.8TLNVTASDD1707 pKa = 4.07DD1708 pKa = 3.8RR1709 pKa = 11.84DD1710 pKa = 3.42GSRR1713 pKa = 11.84TQSFTLAVRR1722 pKa = 11.84NNTPPQFDD1730 pKa = 4.12TVPPIPGYY1738 pKa = 9.82VGEE1741 pKa = 4.45VYY1743 pKa = 10.45SYY1745 pKa = 11.24AIDD1748 pKa = 3.98VSDD1751 pKa = 5.01GDD1753 pKa = 5.04ADD1755 pKa = 5.17DD1756 pKa = 4.45LTLTLDD1762 pKa = 3.61STSVARR1768 pKa = 11.84GMTLSGNASTGYY1780 pKa = 8.03TLNWTPAAEE1789 pKa = 4.2GDD1791 pKa = 4.18YY1792 pKa = 10.82PVTLSLSDD1800 pKa = 3.49GEE1802 pKa = 4.56SRR1804 pKa = 11.84VTQVFVLPVIAPVVEE1819 pKa = 4.47SFPPQITSSPQGPIYY1834 pKa = 10.62AGSPSAWSYY1843 pKa = 10.85TIFANDD1849 pKa = 3.88PDD1851 pKa = 5.32GDD1853 pKa = 4.27DD1854 pKa = 4.15NEE1856 pKa = 4.47LTFALEE1862 pKa = 4.3LPSSNSEE1869 pKa = 3.78VTLTGNVLSWHH1880 pKa = 5.82PTNPGSEE1887 pKa = 4.2TFRR1890 pKa = 11.84IVVTDD1895 pKa = 3.72EE1896 pKa = 4.9DD1897 pKa = 4.07NEE1899 pKa = 4.55STVQSFTATALSSRR1913 pKa = 11.84VGALPEE1919 pKa = 4.04ITSVPTGPAVRR1930 pKa = 11.84GNTYY1934 pKa = 10.04QYY1936 pKa = 11.04QVVAFDD1942 pKa = 4.62PNGDD1946 pKa = 3.83PLTYY1950 pKa = 11.09ALAEE1954 pKa = 4.17PVAGASIDD1962 pKa = 3.82PQTGLLSFTPDD1973 pKa = 2.96SASSVDD1979 pKa = 4.42FDD1981 pKa = 4.54IEE1983 pKa = 4.21VSDD1986 pKa = 5.39GIDD1989 pKa = 3.37GTRR1992 pKa = 11.84TQSFTLDD1999 pKa = 3.01IVSPPGTPPRR2009 pKa = 11.84ITSSPVGPAVSNQAWNYY2026 pKa = 7.79TLAAIDD2032 pKa = 3.92SQGDD2036 pKa = 4.11AITYY2040 pKa = 10.6ALDD2043 pKa = 3.69AVSSSNGTEE2052 pKa = 3.73SVSFNSTTRR2061 pKa = 11.84TLTWTPTDD2069 pKa = 3.55ADD2071 pKa = 3.57LTIIVTLSATDD2082 pKa = 3.52TDD2084 pKa = 3.87GTTPQTFTLGSIAPPSTGGSNEE2106 pKa = 3.96SPVFVSQPQGPVLVGQLWTYY2126 pKa = 7.66VAKK2129 pKa = 9.87ATDD2132 pKa = 4.01ADD2134 pKa = 4.97DD2135 pKa = 4.39DD2136 pKa = 4.35TLTYY2140 pKa = 11.01ALDD2143 pKa = 3.97SASVTAGLSINSATGRR2159 pKa = 11.84IQWQPTTTGDD2169 pKa = 3.63FPVSVTADD2177 pKa = 3.51DD2178 pKa = 4.85GNGGTATQSFTVTVGRR2194 pKa = 11.84SNVAPAIISKK2204 pKa = 10.21PSGPAMVDD2212 pKa = 3.44SPWNYY2217 pKa = 10.08TIVASDD2223 pKa = 3.71TNDD2226 pKa = 3.27SVSTLTYY2233 pKa = 10.42EE2234 pKa = 4.48LLSPATSAEE2243 pKa = 3.6ISFNSTTGTLTWTAPSEE2260 pKa = 4.25TSQSFEE2266 pKa = 4.23VKK2268 pKa = 9.3VTDD2271 pKa = 3.47PHH2273 pKa = 6.29GASATQSFTVNAVDD2287 pKa = 5.06PPITSNVAPVFVSAAPSVVRR2307 pKa = 11.84AGEE2310 pKa = 4.31LYY2312 pKa = 10.13RR2313 pKa = 11.84YY2314 pKa = 8.93AARR2317 pKa = 11.84AVDD2320 pKa = 3.74ADD2322 pKa = 3.99GDD2324 pKa = 4.08ALTYY2328 pKa = 10.45SLSSSPVGMTIHH2340 pKa = 6.87PTTGLVSWTPDD2351 pKa = 2.99SVGTYY2356 pKa = 10.01AVTVAASDD2364 pKa = 4.78GINSAITQSFSVTVAAPVRR2383 pKa = 11.84PNQAPEE2389 pKa = 3.89ITSQPTGPASRR2400 pKa = 11.84HH2401 pKa = 5.36LAWSYY2406 pKa = 7.8QVKK2409 pKa = 8.63ATDD2412 pKa = 3.97PEE2414 pKa = 6.01GDD2416 pKa = 3.48TLTYY2420 pKa = 10.98SLDD2423 pKa = 3.38TSAVPTAAMGDD2434 pKa = 3.71LAINSSTGLITWTPTVAGSFVVKK2457 pKa = 10.15VYY2459 pKa = 9.78ATDD2462 pKa = 3.44PMGANDD2468 pKa = 4.25GQQFTLPVLEE2478 pKa = 4.42NAPPQFITSPPTQSIQMGDD2497 pKa = 3.47AVSYY2501 pKa = 10.87DD2502 pKa = 3.65ADD2504 pKa = 3.7AVDD2507 pKa = 5.04PNPGDD2512 pKa = 3.89TITYY2516 pKa = 10.76ALDD2519 pKa = 3.43QVSLDD2524 pKa = 3.11RR2525 pKa = 11.84GMTINGSS2532 pKa = 3.35

Molecular weight:
263.52 kDa
Isoelectric point according different methods:






Protein with the highest isoelectric point:
>tr|M5RHC0|M5RHC0_9BACT Signal peptide protein OS=Rhodopirellula maiorica SM1 OX=1265738 GN=RMSM_04514 PE=4 SV=1
MM1 pKa = 7.38FLFAHH6 pKa = 6.86FGMSATLPSNFRR18 pKa = 11.84RR19 pKa = 11.84PLLLIVAIALLIGSATAWWLGGEE42 pKa = 4.32SSSKK46 pKa = 10.05FAAAAMGRR54 pKa = 11.84IGLVLAALWLAWPSLRR70 pKa = 11.84RR71 pKa = 11.84PARR74 pKa = 11.84WFPPAVAVIGVISLMVLAAQPRR96 pKa = 11.84LIFAVVPAAATLISITMMIRR116 pKa = 11.84GFRR119 pKa = 11.84GPPKK123 pKa = 10.59GG124 pKa = 3.52

Molecular weight:
13.23 kDa
Isoelectric point according different methods:






Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7824

0

7824

2504267

34

5190

320.1

35.27

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.588 ± 0.026

1.114 ± 0.01

6.473 ± 0.029

5.936 ± 0.027

3.715 ± 0.018

7.422 ± 0.036

2.295 ± 0.017

5.256 ± 0.022

3.648 ± 0.028

9.284 ± 0.029

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.346 ± 0.017

3.432 ± 0.025

5.041 ± 0.02

4.099 ± 0.019

6.558 ± 0.031

6.946 ± 0.028

5.787 ± 0.036

7.182 ± 0.024

1.475 ± 0.014

2.404 ± 0.015

Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski