Faeces associated gemycircularvirus 18

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemycircularvirus; Gemycircularvirus equas1; Equine associated gemycircularvirus 1

Average proteome isoelectric point is 6.42

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A160HX62|A0A160HX62_9VIRU Capsid protein OS=Faeces associated gemycircularvirus 18 OX=1843738 PE=4 SV=1
MM1 pKa = 6.76PTFYY5 pKa = 10.64FSARR9 pKa = 11.84YY10 pKa = 9.46VLLTYY15 pKa = 7.98SQCGTLDD22 pKa = 2.99EE23 pKa = 4.76WDD25 pKa = 3.96VLDD28 pKa = 5.56HH29 pKa = 6.74ISSLGAEE36 pKa = 4.45CIIGRR41 pKa = 11.84EE42 pKa = 4.05DD43 pKa = 3.35HH44 pKa = 7.18ADD46 pKa = 3.64GGTHH50 pKa = 6.1LHH52 pKa = 5.74VFVDD56 pKa = 5.19FGHH59 pKa = 6.72KK60 pKa = 9.51KK61 pKa = 8.11QSRR64 pKa = 11.84RR65 pKa = 11.84SGFFDD70 pKa = 3.79VGGKK74 pKa = 9.26HH75 pKa = 6.09PNVVPSRR82 pKa = 11.84GRR84 pKa = 11.84AGEE87 pKa = 4.05GWDD90 pKa = 3.6YY91 pKa = 11.53AVKK94 pKa = 10.58DD95 pKa = 4.04GNVVAGGLPRR105 pKa = 11.84PGSGGLPSVEE115 pKa = 4.91NIWSSIVDD123 pKa = 3.41AQSRR127 pKa = 11.84EE128 pKa = 4.01EE129 pKa = 3.84FLEE132 pKa = 4.05LVRR135 pKa = 11.84ALAPKK140 pKa = 10.32EE141 pKa = 3.61FILRR145 pKa = 11.84HH146 pKa = 5.74KK147 pKa = 10.33EE148 pKa = 3.59LLEE151 pKa = 4.09YY152 pKa = 10.57ADD154 pKa = 3.99RR155 pKa = 11.84YY156 pKa = 7.71YY157 pKa = 11.32AEE159 pKa = 5.19RR160 pKa = 11.84IEE162 pKa = 4.88PYY164 pKa = 10.15VGPDD168 pKa = 3.47GIEE171 pKa = 4.18FEE173 pKa = 4.64LGMVPEE179 pKa = 4.18LAGWGRR185 pKa = 11.84EE186 pKa = 3.95LVEE189 pKa = 4.59ADD191 pKa = 4.15SVTGEE196 pKa = 4.02CPLRR200 pKa = 11.84SGAEE204 pKa = 4.05YY205 pKa = 10.27ISARR209 pKa = 11.84VV210 pKa = 3.16

Molecular weight: 23.22 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A160HX62|A0A160HX62_9VIRU Capsid protein OS=Faeces associated gemycircularvirus 18 OX=1843738 PE=4 SV=1
MM1 pKa = 7.75AYY3 pKa = 10.17ARR5 pKa = 11.84KK6 pKa = 9.45RR7 pKa = 11.84RR8 pKa = 11.84YY9 pKa = 9.7ARR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 9.23SGSSKK18 pKa = 10.47GKK20 pKa = 8.41RR21 pKa = 11.84TTRR24 pKa = 11.84PSARR28 pKa = 11.84RR29 pKa = 11.84YY30 pKa = 9.61RR31 pKa = 11.84STGRR35 pKa = 11.84TRR37 pKa = 11.84RR38 pKa = 11.84STRR41 pKa = 11.84TRR43 pKa = 11.84PMSKK47 pKa = 10.29KK48 pKa = 10.49SILNTTSRR56 pKa = 11.84KK57 pKa = 9.22KK58 pKa = 10.51RR59 pKa = 11.84NGMLTFSNSTGTGVLASIGQNPLTIAGSAAGNNLGYY95 pKa = 10.7VHH97 pKa = 6.95FRR99 pKa = 11.84PTAMDD104 pKa = 4.39LNDD107 pKa = 4.03NNAAPNSITTMSARR121 pKa = 11.84TSTTCFLRR129 pKa = 11.84GLAEE133 pKa = 4.42NIRR136 pKa = 11.84IEE138 pKa = 4.32TSSGNPWFHH147 pKa = 6.87RR148 pKa = 11.84RR149 pKa = 11.84ICFTSRR155 pKa = 11.84DD156 pKa = 3.77TLFLSVASADD166 pKa = 3.81TPGTDD171 pKa = 2.82RR172 pKa = 11.84AAAASGAIEE181 pKa = 4.6TSNGWQRR188 pKa = 11.84LAANMALDD196 pKa = 3.86TMTGTINNFNGLIFKK211 pKa = 7.6GTQGRR216 pKa = 11.84RR217 pKa = 11.84LGMTSLLHH225 pKa = 6.92LSILHH230 pKa = 6.77ALTSSMTRR238 pKa = 11.84PRR240 pKa = 11.84FTNPGNEE247 pKa = 3.49RR248 pKa = 11.84GVLRR252 pKa = 11.84EE253 pKa = 3.92TKK255 pKa = 9.32IWHH258 pKa = 6.52PMNKK262 pKa = 9.98NIVYY266 pKa = 10.5DD267 pKa = 3.93DD268 pKa = 4.28DD269 pKa = 3.92EE270 pKa = 7.1RR271 pKa = 11.84GDD273 pKa = 4.06KK274 pKa = 10.84YY275 pKa = 10.93ATNNYY280 pKa = 9.98SVTDD284 pKa = 3.5KK285 pKa = 11.19RR286 pKa = 11.84GMGDD290 pKa = 2.99YY291 pKa = 10.64HH292 pKa = 8.78IIDD295 pKa = 4.92LFSQGSSGSTSDD307 pKa = 3.77LLKK310 pKa = 10.32IRR312 pKa = 11.84YY313 pKa = 6.3TSTMYY318 pKa = 9.55WHH320 pKa = 7.09EE321 pKa = 4.17KK322 pKa = 9.5

Molecular weight: 35.75 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

870

210

338

290.0

32.22

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.356 ± 0.186

1.034 ± 0.197

5.862 ± 0.719

5.862 ± 1.772

3.793 ± 0.315

9.885 ± 0.806

2.529 ± 0.276

4.713 ± 0.156

3.908 ± 0.412

8.391 ± 0.603

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.299 ± 0.678

3.678 ± 1.579

4.483 ± 0.627

1.609 ± 0.223

8.391 ± 1.13

8.276 ± 1.042

6.207 ± 2.555

6.092 ± 1.924

1.954 ± 0.367

3.678 ± 0.28
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski