Marmoricola pocheonensis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Propionibacteriales; Nocardioidaceae; Marmoricola

Average proteome isoelectric point is 6.12

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4648 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3N0GFE9|A0A3N0GFE9_9ACTN Sugar ABC transporter permease OS=Marmoricola pocheonensis OX=661485 GN=EFL26_23400 PE=4 SV=1
MM1 pKa = 7.2YY2 pKa = 9.98PDD4 pKa = 4.02DD5 pKa = 4.39LKK7 pKa = 10.95YY8 pKa = 9.02TAEE11 pKa = 4.35HH12 pKa = 5.76EE13 pKa = 4.54WVRR16 pKa = 11.84TPGEE20 pKa = 4.0SAGSVRR26 pKa = 11.84IGITDD31 pKa = 3.6YY32 pKa = 11.6AQDD35 pKa = 3.58ALGDD39 pKa = 3.62IVYY42 pKa = 10.08VQLPEE47 pKa = 4.01VGEE50 pKa = 4.41SVTAGAAVGEE60 pKa = 4.3LEE62 pKa = 4.36STKK65 pKa = 10.63SVSDD69 pKa = 3.57VYY71 pKa = 11.56SPVTGQVVARR81 pKa = 11.84NEE83 pKa = 4.28SLDD86 pKa = 3.62ATPEE90 pKa = 4.02LVNTDD95 pKa = 3.78PYY97 pKa = 10.84GSGWLFEE104 pKa = 4.37VTVDD108 pKa = 4.06DD109 pKa = 4.65ADD111 pKa = 4.05SGVEE115 pKa = 4.05LLDD118 pKa = 3.72AAAYY122 pKa = 6.74EE123 pKa = 4.03QLVASS128 pKa = 4.74

Molecular weight: 13.57 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3N0GXP4|A0A3N0GXP4_9ACTN ABC transporter ATP-binding protein OS=Marmoricola pocheonensis OX=661485 GN=EFL26_02495 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.42KK7 pKa = 8.47RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.22RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.99KK16 pKa = 9.77HH17 pKa = 5.81RR18 pKa = 11.84KK19 pKa = 8.51LLKK22 pKa = 8.15KK23 pKa = 9.12TRR25 pKa = 11.84VQRR28 pKa = 11.84RR29 pKa = 11.84RR30 pKa = 11.84LGKK33 pKa = 10.04

Molecular weight: 4.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4648

0

4648

1476297

31

1943

317.6

34.07

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.115 ± 0.056

0.745 ± 0.011

6.292 ± 0.026

5.605 ± 0.047

2.862 ± 0.02

9.089 ± 0.032

2.365 ± 0.018

3.502 ± 0.024

1.991 ± 0.023

10.308 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.875 ± 0.013

1.849 ± 0.02

5.59 ± 0.032

2.821 ± 0.022

7.717 ± 0.041

5.356 ± 0.025

6.037 ± 0.033

9.366 ± 0.037

1.53 ± 0.013

1.984 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski