Caligus rogercresseyi rhabdovirus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Caligrhavirus; Caligus caligrhavirus

Average proteome isoelectric point is 6.6

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L2YZV1|A0A1L2YZV1_9RHAB Glycoprotein OS=Caligus rogercresseyi rhabdovirus OX=1921414 GN=G PE=4 SV=1
MM1 pKa = 8.22DD2 pKa = 6.52DD3 pKa = 5.64DD4 pKa = 5.35IIHH7 pKa = 6.85FKK9 pKa = 8.87TGKK12 pKa = 9.68VFNLLAPVEE21 pKa = 4.29NLPTQYY27 pKa = 10.41PATWFQQEE35 pKa = 4.12KK36 pKa = 9.66KK37 pKa = 10.39KK38 pKa = 10.66PYY40 pKa = 8.78LTLRR44 pKa = 11.84LPQSLIAEE52 pKa = 4.74PARR55 pKa = 11.84IVALLEE61 pKa = 3.84AQMQIGRR68 pKa = 11.84VTPDD72 pKa = 2.98VLAFGYY78 pKa = 10.51KK79 pKa = 9.99FLLDD83 pKa = 3.81RR84 pKa = 11.84EE85 pKa = 4.47VLTRR89 pKa = 11.84DD90 pKa = 3.03GPAWVSFDD98 pKa = 3.75QQITHH103 pKa = 6.01EE104 pKa = 4.43NKK106 pKa = 10.13DD107 pKa = 3.73RR108 pKa = 11.84LDD110 pKa = 4.93GILTMTMQAEE120 pKa = 4.81DD121 pKa = 3.95GLEE124 pKa = 4.01MKK126 pKa = 10.01EE127 pKa = 4.22GKK129 pKa = 7.51PTLVDD134 pKa = 3.21TLYY137 pKa = 11.47VNLVVCGAIVRR148 pKa = 11.84RR149 pKa = 11.84DD150 pKa = 3.29RR151 pKa = 11.84VANVAGKK158 pKa = 10.14DD159 pKa = 3.38RR160 pKa = 11.84ITQIVTRR167 pKa = 11.84AVQSSMGIDD176 pKa = 2.88ISGYY180 pKa = 9.22LGSVQVTTNATTTKK194 pKa = 10.21IMAAVDD200 pKa = 3.25MYY202 pKa = 11.14LYY204 pKa = 10.6NRR206 pKa = 11.84RR207 pKa = 11.84DD208 pKa = 3.08SMYY211 pKa = 10.62GFLRR215 pKa = 11.84LGTVCTRR222 pKa = 11.84YY223 pKa = 9.8RR224 pKa = 11.84DD225 pKa = 3.85CTVLSEE231 pKa = 4.39FVLLEE236 pKa = 4.52DD237 pKa = 5.58LSQTKK242 pKa = 10.26CKK244 pKa = 10.12EE245 pKa = 4.12AISWILSPIVSDD257 pKa = 3.69EE258 pKa = 5.0LISTMEE264 pKa = 4.68PGQEE268 pKa = 3.91THH270 pKa = 6.63SVGSYY275 pKa = 8.44MPYY278 pKa = 10.38MMDD281 pKa = 3.35LQLSTRR287 pKa = 11.84SPYY290 pKa = 9.27STSEE294 pKa = 3.64NPKK297 pKa = 7.58YY298 pKa = 9.29HH299 pKa = 5.15TWIHH303 pKa = 5.32IVGTLLHH310 pKa = 7.0KK311 pKa = 10.48DD312 pKa = 3.31RR313 pKa = 11.84CRR315 pKa = 11.84KK316 pKa = 9.42AAVIEE321 pKa = 3.93EE322 pKa = 4.12ALIGRR327 pKa = 11.84LFKK330 pKa = 10.85GAALAAYY337 pKa = 8.89RR338 pKa = 11.84WTEE341 pKa = 3.56SDD343 pKa = 3.19EE344 pKa = 4.16VVQVFGRR351 pKa = 11.84MRR353 pKa = 11.84DD354 pKa = 3.52KK355 pKa = 11.12VIEE358 pKa = 4.04EE359 pKa = 3.96SAAEE363 pKa = 3.83IRR365 pKa = 11.84RR366 pKa = 11.84SQLEE370 pKa = 3.95ANFLDD375 pKa = 4.38GTDD378 pKa = 4.23PEE380 pKa = 4.42EE381 pKa = 4.86DD382 pKa = 3.64SPGAYY387 pKa = 10.01ADD389 pKa = 3.7WARR392 pKa = 11.84DD393 pKa = 3.45EE394 pKa = 4.31YY395 pKa = 10.52PRR397 pKa = 11.84KK398 pKa = 10.04LFQFIDD404 pKa = 3.46NTLNGQFMVIRR415 pKa = 11.84KK416 pKa = 9.66GSMGDD421 pKa = 3.06FVRR424 pKa = 11.84NHH426 pKa = 5.31WAGHH430 pKa = 6.01RR431 pKa = 11.84DD432 pKa = 3.3SLVPEE437 pKa = 4.49KK438 pKa = 11.05FEE440 pKa = 4.14LPPWNGSIFPNAA452 pKa = 3.87

Molecular weight: 51.27 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L2YZU8|A0A1L2YZU8_9RHAB Uncharacterized protein OS=Caligus rogercresseyi rhabdovirus OX=1921414 PE=4 SV=1
MM1 pKa = 7.39KK2 pKa = 10.35KK3 pKa = 9.71IFRR6 pKa = 11.84SKK8 pKa = 10.71RR9 pKa = 11.84LGSTPVASAPTVPGPWRR26 pKa = 11.84ISPQEE31 pKa = 4.1DD32 pKa = 3.27LSKK35 pKa = 10.75RR36 pKa = 11.84GASAGPSKK44 pKa = 9.99TKK46 pKa = 10.66GQGSPQCNCRR56 pKa = 11.84EE57 pKa = 3.77VKK59 pKa = 10.55LRR61 pKa = 11.84IKK63 pKa = 10.26GHH65 pKa = 5.46LSIRR69 pKa = 11.84LGSSPRR75 pKa = 11.84TRR77 pKa = 11.84EE78 pKa = 3.61QAQYY82 pKa = 11.48ACTNFLDD89 pKa = 3.85QYY91 pKa = 10.88GEE93 pKa = 4.36SIEE96 pKa = 4.67KK97 pKa = 10.6SGLYY101 pKa = 5.68WTAVIILARR110 pKa = 11.84KK111 pKa = 7.76LQSVHH116 pKa = 6.73PGGGNSDD123 pKa = 3.67YY124 pKa = 10.64TASLDD129 pKa = 3.79EE130 pKa = 5.22NISILTTIASDD141 pKa = 4.19LLNDD145 pKa = 3.52IPKK148 pKa = 10.66LEE150 pKa = 4.12MSYY153 pKa = 8.98GTQEE157 pKa = 4.51GISGRR162 pKa = 11.84FGIISIQLTPTRR174 pKa = 11.84SPALPLRR181 pKa = 11.84AVLAKK186 pKa = 10.26IKK188 pKa = 10.73LPAEE192 pKa = 4.28KK193 pKa = 9.37FIKK196 pKa = 9.54MAEE199 pKa = 4.38TFGVTYY205 pKa = 10.26EE206 pKa = 4.67LIQGKK211 pKa = 9.17IVLHH215 pKa = 5.58TTTQSRR221 pKa = 11.84SHH223 pKa = 6.29LRR225 pKa = 11.84EE226 pKa = 3.76VVLL229 pKa = 4.9

Molecular weight: 25.03 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

3737

136

2130

622.8

70.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.272 ± 0.465

1.525 ± 0.512

5.727 ± 0.313

6.342 ± 0.345

3.746 ± 0.395

6.396 ± 0.31

2.275 ± 0.272

5.941 ± 0.434

5.539 ± 0.67

10.891 ± 0.758

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.034 ± 0.323

3.72 ± 0.286

4.977 ± 0.376

3.372 ± 0.361

6.904 ± 0.498

8.188 ± 0.46

6.529 ± 0.595

5.593 ± 0.316

1.82 ± 0.237

3.211 ± 0.256
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski