Salmonella phage FSL SP-076

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Schitoviridae; Humphriesvirinae; Ithacavirus; Salmonella virus FSL SP-076

Average proteome isoelectric point is 6.14

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 82 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|S4TU53|S4TU53_9CAUD Uncharacterized protein OS=Salmonella phage FSL SP-076 OX=1173762 GN=SP076_00130 PE=4 SV=1
MM1 pKa = 7.54GLYY4 pKa = 9.98LYY6 pKa = 9.58CQNTEE11 pKa = 3.73CGQYY15 pKa = 10.35VDD17 pKa = 6.28GMDD20 pKa = 4.26CQCCGWTQPLPEE32 pKa = 5.07PEE34 pKa = 4.37FEE36 pKa = 4.67LPEE39 pKa = 4.43DD40 pKa = 4.3LKK42 pKa = 11.25QALQDD47 pKa = 3.55ALDD50 pKa = 4.55FVGHH54 pKa = 6.58DD55 pKa = 4.03CRR57 pKa = 11.84FDD59 pKa = 3.18HH60 pKa = 7.32HH61 pKa = 7.08GYY63 pKa = 9.16CQEE66 pKa = 4.65HH67 pKa = 6.51GLQEE71 pKa = 4.21EE72 pKa = 4.67DD73 pKa = 3.79SCFAGVFRR81 pKa = 11.84KK82 pKa = 10.21YY83 pKa = 10.96LEE85 pKa = 4.01

Molecular weight: 9.85 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|S4TT92|S4TT92_9CAUD Uncharacterized protein OS=Salmonella phage FSL SP-076 OX=1173762 GN=SP076_00395 PE=4 SV=1
MM1 pKa = 7.52SIKK4 pKa = 9.83LTVVAKK10 pKa = 10.23RR11 pKa = 11.84YY12 pKa = 9.39NSEE15 pKa = 3.59KK16 pKa = 10.29FIRR19 pKa = 11.84ILMPWGSNISYY30 pKa = 9.6GRR32 pKa = 11.84RR33 pKa = 11.84WQVSFKK39 pKa = 10.5DD40 pKa = 3.56GRR42 pKa = 11.84GRR44 pKa = 11.84HH45 pKa = 5.31YY46 pKa = 11.18DD47 pKa = 3.06HH48 pKa = 7.2SFVAKK53 pKa = 7.73PTRR56 pKa = 11.84KK57 pKa = 9.61QIRR60 pKa = 11.84KK61 pKa = 9.18LIKK64 pKa = 10.3DD65 pKa = 3.3INKK68 pKa = 9.9

Molecular weight: 8.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

82

0

82

21057

53

3595

256.8

28.54

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.301 ± 0.349

0.907 ± 0.167

6.169 ± 0.185

6.444 ± 0.281

3.671 ± 0.168

6.782 ± 0.338

1.615 ± 0.142

6.473 ± 0.239

6.254 ± 0.309

8.577 ± 0.217

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.712 ± 0.149

5.547 ± 0.245

4.022 ± 0.146

4.678 ± 0.314

4.127 ± 0.187

6.178 ± 0.194

6.136 ± 0.294

6.839 ± 0.24

1.035 ± 0.1

3.533 ± 0.223
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski