Idiomarina tyrosinivorans

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Idiomarinaceae; Idiomarina

Average proteome isoelectric point is 6.25

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2274 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A432ZQU4|A0A432ZQU4_9GAMM GTPase Der OS=Idiomarina tyrosinivorans OX=1445662 GN=der PE=3 SV=1
MM1 pKa = 7.56KK2 pKa = 10.1FLHH5 pKa = 6.69SLTAIAVAAALSACGGDD22 pKa = 3.73DD23 pKa = 3.95EE24 pKa = 6.54KK25 pKa = 11.62NVAPIATDD33 pKa = 3.49DD34 pKa = 4.18SYY36 pKa = 11.52TATVGATNTIDD47 pKa = 3.87VLANDD52 pKa = 3.93SDD54 pKa = 4.47EE55 pKa = 4.27NTKK58 pKa = 9.44DD59 pKa = 3.55TLSVTAVTQPDD70 pKa = 3.83SGSVTINSDD79 pKa = 3.03GTLSFEE85 pKa = 4.7PSGDD89 pKa = 3.52TLGDD93 pKa = 3.38DD94 pKa = 3.44SFTYY98 pKa = 9.6TVSDD102 pKa = 4.35GEE104 pKa = 4.45LDD106 pKa = 3.64DD107 pKa = 4.14TATVSLTVQQALAFSGKK124 pKa = 9.89VVDD127 pKa = 4.39AAIPNATVTITIGEE141 pKa = 4.31DD142 pKa = 3.35TFTTTADD149 pKa = 3.28EE150 pKa = 4.78DD151 pKa = 4.06GNYY154 pKa = 8.84TLEE157 pKa = 3.94VFYY160 pKa = 10.86TDD162 pKa = 2.97GTKK165 pKa = 10.11LVKK168 pKa = 10.19IEE170 pKa = 4.25AVGSADD176 pKa = 3.78NEE178 pKa = 4.0QDD180 pKa = 4.08HH181 pKa = 6.92VDD183 pKa = 4.03LTSLMPSLATLQGLAGDD200 pKa = 4.07DD201 pKa = 4.43AIVQRR206 pKa = 11.84SEE208 pKa = 4.18AGGTNVTNVTTASYY222 pKa = 11.52VLTKK226 pKa = 9.87EE227 pKa = 4.33ANGGEE232 pKa = 4.19DD233 pKa = 3.42PADD236 pKa = 3.89EE237 pKa = 4.41NTLSAAEE244 pKa = 4.15SNIDD248 pKa = 3.27GTKK251 pKa = 9.75VLEE254 pKa = 3.88IAAVIKK260 pKa = 10.34VIVDD264 pKa = 3.44NPDD267 pKa = 2.76FDD269 pKa = 5.81LPDD272 pKa = 3.77GVSTIGEE279 pKa = 4.69LINDD283 pKa = 3.32EE284 pKa = 4.27TAYY287 pKa = 10.79NDD289 pKa = 3.14YY290 pKa = 10.73VAYY293 pKa = 10.69VEE295 pKa = 4.43NTDD298 pKa = 3.52PTALQAAADD307 pKa = 4.52AIVEE311 pKa = 4.18DD312 pKa = 4.56EE313 pKa = 4.4EE314 pKa = 4.5LTVASTQFKK323 pKa = 10.81LPAFYY328 pKa = 10.23IQLPTTQPGFIARR341 pKa = 11.84GDD343 pKa = 3.53STLYY347 pKa = 10.98FNDD350 pKa = 4.83DD351 pKa = 3.24GTGVYY356 pKa = 10.3INGFFGLEE364 pKa = 3.97NEE366 pKa = 4.79TDD368 pKa = 4.35FTWSRR373 pKa = 11.84DD374 pKa = 3.61DD375 pKa = 3.53NGYY378 pKa = 9.89YY379 pKa = 10.81ALDD382 pKa = 3.74FATPAVYY389 pKa = 9.45IDD391 pKa = 4.0YY392 pKa = 8.91PAVTDD397 pKa = 3.69EE398 pKa = 4.67TDD400 pKa = 3.29DD401 pKa = 3.74ATILAAYY408 pKa = 9.6DD409 pKa = 3.68DD410 pKa = 4.13ASVYY414 pKa = 9.51QVEE417 pKa = 4.74TEE419 pKa = 4.22VSVSALAFKK428 pKa = 10.94LLVDD432 pKa = 4.77GKK434 pKa = 9.08TVDD437 pKa = 3.62LVQAKK442 pKa = 7.42EE443 pKa = 4.44TYY445 pKa = 8.73TKK447 pKa = 10.52VYY449 pKa = 10.42QPLNGVDD456 pKa = 3.11GKK458 pKa = 9.41TYY460 pKa = 10.1QIPTAQGVRR469 pKa = 11.84KK470 pKa = 8.97FQYY473 pKa = 10.5SYY475 pKa = 11.71LNGDD479 pKa = 4.64ALPKK483 pKa = 10.2IAGTEE488 pKa = 3.84ADD490 pKa = 4.09LTTQQWVLPIVGLAAPGDD508 pKa = 3.76MHH510 pKa = 7.24EE511 pKa = 4.9ALQPDD516 pKa = 5.52LITFNSDD523 pKa = 2.38GSFGSDD529 pKa = 3.31YY530 pKa = 11.4AGVDD534 pKa = 4.23GEE536 pKa = 4.38WSLTDD541 pKa = 4.06SIISMSYY548 pKa = 8.82TSEE551 pKa = 3.79EE552 pKa = 4.1FGDD555 pKa = 3.98VEE557 pKa = 4.29QKK559 pKa = 10.45VQIVSTKK566 pKa = 9.99NGVYY570 pKa = 8.8TAFVEE575 pKa = 4.92VSSEE579 pKa = 3.75AANATWYY586 pKa = 10.45DD587 pKa = 3.28WVAPRR592 pKa = 11.84DD593 pKa = 3.74PEE595 pKa = 4.26YY596 pKa = 10.79TIDD599 pKa = 4.47PADD602 pKa = 4.11LVNTAATMWLTNPNIWYY619 pKa = 10.06ASQWDD624 pKa = 3.72QAEE627 pKa = 4.17NLPSVFTILGWQFDD641 pKa = 4.5EE642 pKa = 4.62AGKK645 pKa = 10.49AYY647 pKa = 7.59RR648 pKa = 11.84TSVGCQEE655 pKa = 4.24YY656 pKa = 10.82YY657 pKa = 10.07IDD659 pKa = 4.15GTCTYY664 pKa = 11.03DD665 pKa = 3.12STLVVLNNSTRR676 pKa = 11.84NYY678 pKa = 10.44RR679 pKa = 11.84VIEE682 pKa = 4.48DD683 pKa = 3.21SSGQQRR689 pKa = 11.84IQMAYY694 pKa = 9.97NFEE697 pKa = 4.34CFGAGNQVDD706 pKa = 4.49ANCAAYY712 pKa = 9.68EE713 pKa = 3.95YY714 pKa = 10.53IPLQEE719 pKa = 4.71AEE721 pKa = 4.36NGQITLLEE729 pKa = 4.32SVFVDD734 pKa = 4.2RR735 pKa = 11.84DD736 pKa = 3.01PSTPVNLVSGFTPRR750 pKa = 11.84VTVSIPFEE758 pKa = 4.03FPQGIEE764 pKa = 3.62NSAFPGATASSGQAMPAGKK783 pKa = 9.77VDD785 pKa = 3.35RR786 pKa = 11.84VSFLGKK792 pKa = 8.62TKK794 pKa = 10.47SAPLVINHH802 pKa = 7.01

Molecular weight: 85.99 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A432ZTA2|A0A432ZTA2_9GAMM Peptidase M23 OS=Idiomarina tyrosinivorans OX=1445662 GN=CWI84_03185 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.42RR12 pKa = 11.84KK13 pKa = 9.36RR14 pKa = 11.84SHH16 pKa = 6.15GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.37NGRR28 pKa = 11.84KK29 pKa = 8.96VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 8.91VLSAA44 pKa = 4.11

Molecular weight: 5.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2274

0

2274

746298

35

2761

328.2

36.46

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.859 ± 0.054

0.882 ± 0.017

5.667 ± 0.048

6.125 ± 0.052

3.757 ± 0.034

6.863 ± 0.054

2.258 ± 0.029

5.578 ± 0.036

4.367 ± 0.045

10.556 ± 0.061

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.396 ± 0.027

3.645 ± 0.041

4.134 ± 0.035

5.854 ± 0.059

5.597 ± 0.04

5.987 ± 0.046

5.046 ± 0.038

7.11 ± 0.045

1.42 ± 0.025

2.897 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski