Lysobacter daejeonensis GH1-9

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter; Lysobacter daejeonensis

Average proteome isoelectric point is 6.64

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2570 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    

Protein with the lowest isoelectric point:
>tr|A0A0A0ETD8|A0A0A0ETD8_9GAMM LacI family transcriptional regulator OS=Lysobacter daejeonensis GH1-9 OX=1385517 GN=N800_07390 PE=4 SV=1
MM1 pKa = 7.72ALACLLLMVSATPAAQAQTVTATNSLSCLANRR33 pKa = 11.84MDD35 pKa = 3.67NPTNLGCTANDD46 pKa = 3.68FSHH49 pKa = 7.05IVTAQALSAPTTCTAGSEE67 pKa = 4.22ITVSVQLTLQSNSTDD82 pKa = 3.34RR83 pKa = 11.84YY84 pKa = 10.89DD85 pKa = 3.18IGLFMGEE92 pKa = 4.89DD93 pKa = 3.95GNNPAQLGGTCSVATFPEE111 pKa = 4.81SPAPFADD118 pKa = 4.33LDD120 pKa = 4.25AGTQPTDD127 pKa = 2.79TCGDD131 pKa = 3.83FNANGSATVTVQNVKK146 pKa = 8.69LTCTAGADD154 pKa = 3.89GKK156 pKa = 11.16LVMPYY161 pKa = 9.69TLAYY165 pKa = 9.03SQNTGGVCTGPGVVRR180 pKa = 11.84AGTTSKK186 pKa = 9.87CTGGTASVSNIVVAGHH202 pKa = 6.26VDD204 pKa = 3.45VTKK207 pKa = 9.62QTLPDD212 pKa = 3.85AAPDD216 pKa = 3.7SFAFTAVDD224 pKa = 4.66GPDD227 pKa = 3.34TSPTSFNLVDD237 pKa = 3.94GGTQRR242 pKa = 11.84VTTTFGATGSSITIDD257 pKa = 3.64EE258 pKa = 4.43NVPPHH263 pKa = 6.12WRR265 pKa = 11.84SSVACASSNVDD276 pKa = 2.98TSGQANGTFIANLTSAEE293 pKa = 4.02PTANCTVTNTKK304 pKa = 10.09RR305 pKa = 11.84SRR307 pKa = 11.84ITLVKK312 pKa = 10.57NIVGGRR318 pKa = 11.84NNAADD323 pKa = 3.63QFTVSGTGGGTLTNTSDD340 pKa = 3.58VTMSAPVSATTSGTSTTASVTFYY363 pKa = 10.82SSPGSGLTLTDD374 pKa = 3.04AMAAGSVSTLADD386 pKa = 3.34YY387 pKa = 9.7TPTYY391 pKa = 10.68SCTNATAGSPTSMPSGSGATFGLTPAPGDD420 pKa = 5.15DD421 pKa = 3.52ITCTYY426 pKa = 10.3TNTLIARR433 pKa = 11.84PSLLLDD439 pKa = 3.32KK440 pKa = 10.66RR441 pKa = 11.84LVSGAGFDD449 pKa = 3.74SVGDD453 pKa = 4.05VIQYY457 pKa = 10.88AYY459 pKa = 10.84DD460 pKa = 3.47VTNSGNVTITGPITVSDD477 pKa = 4.13DD478 pKa = 3.62KK479 pKa = 10.9IASVTCPAGDD489 pKa = 4.08LAPGAMITCTASYY502 pKa = 9.49TVAQADD508 pKa = 3.81INNGSVTNVATATGSFNNQPITSNADD534 pKa = 3.36TVTVEE539 pKa = 4.15ALQEE543 pKa = 3.98PALTLAKK550 pKa = 9.32TAVSGDD556 pKa = 3.88PYY558 pKa = 11.41DD559 pKa = 4.46SIGDD563 pKa = 3.81VVQYY567 pKa = 10.51EE568 pKa = 4.29YY569 pKa = 11.44LVTNSGNVVITDD581 pKa = 5.42PITVADD587 pKa = 4.67DD588 pKa = 3.66KK589 pKa = 10.61TTVTCPALPGGGLAPGGSITCTASYY614 pKa = 9.82TITQADD620 pKa = 3.37VDD622 pKa = 4.25AGSVTNLATATSGTVNSNQATEE644 pKa = 4.4TVNATRR650 pKa = 11.84SPSLGLEE657 pKa = 4.18KK658 pKa = 9.88TASPLVYY665 pKa = 10.05AAAGDD670 pKa = 4.15VISYY674 pKa = 10.61SYY676 pKa = 11.63LLTNTGNVTLSAPYY690 pKa = 9.2TVADD694 pKa = 4.41DD695 pKa = 4.2KK696 pKa = 10.68TTVTCPATPGTLAPGGTVTCTATYY720 pKa = 9.36TITQTDD726 pKa = 3.69VNAGSVTNVATASAIFNNAAVNSAQDD752 pKa = 3.58SATVTATQTPTLSLDD767 pKa = 3.06KK768 pKa = 10.63RR769 pKa = 11.84LVSGAGFDD777 pKa = 3.74SVGDD781 pKa = 4.05VIQYY785 pKa = 10.88AYY787 pKa = 10.84DD788 pKa = 3.47VTNSGNVTITGPITVSDD805 pKa = 4.13DD806 pKa = 3.62KK807 pKa = 10.9IASVTCPAGDD817 pKa = 4.08LAPGAMITCTASYY830 pKa = 9.49TVAQADD836 pKa = 3.81INNGSVTNVATATGSFNNQPITSNADD862 pKa = 3.36TVTVEE867 pKa = 4.15ALQEE871 pKa = 3.98PALTLAKK878 pKa = 9.32TAVSGDD884 pKa = 3.88PYY886 pKa = 11.41DD887 pKa = 4.46SIGDD891 pKa = 3.81VVQYY895 pKa = 10.51EE896 pKa = 4.29YY897 pKa = 11.44LVTNSGNVVITDD909 pKa = 5.42PITVADD915 pKa = 4.67DD916 pKa = 3.66KK917 pKa = 10.61TTVTCPALPGGGLAPGGSITCTASYY942 pKa = 9.82TITQADD948 pKa = 3.37VDD950 pKa = 4.25AGSVTNLATATSGTVNSNQATEE972 pKa = 4.4TVNATRR978 pKa = 11.84SPSLGLEE985 pKa = 4.18KK986 pKa = 9.88TASPLVYY993 pKa = 10.05AAAGDD998 pKa = 4.15VISYY1002 pKa = 10.61SYY1004 pKa = 11.63LLTNTGNVTLSAPYY1018 pKa = 9.2TVADD1022 pKa = 4.41DD1023 pKa = 4.2KK1024 pKa = 10.68TTVTCPATPGTLAPGGTVTCTATYY1048 pKa = 9.36TITQTDD1054 pKa = 3.69VNAGSVTNVATASAIFNNAAVNSAQDD1080 pKa = 3.58SATVTATQTPTLSLDD1095 pKa = 3.06KK1096 pKa = 10.63RR1097 pKa = 11.84LVSGAGFDD1105 pKa = 3.74SVGDD1109 pKa = 4.05VIQYY1113 pKa = 10.88AYY1115 pKa = 10.84DD1116 pKa = 3.47VTNSGNVTITGPITISDD1133 pKa = 3.9DD1134 pKa = 3.72KK1135 pKa = 10.6IASVTCPAGDD1145 pKa = 4.08LAPGAMVTCTASYY1158 pKa = 9.77TVTQADD1164 pKa = 3.93INTGSVTNIATAAGSFNNQPVTSNPDD1190 pKa = 3.38TVTVEE1195 pKa = 4.06ALQEE1199 pKa = 3.98PALTLAKK1206 pKa = 9.32TAVSGDD1212 pKa = 3.95PYY1214 pKa = 11.28DD1215 pKa = 3.51SVGDD1219 pKa = 3.88VVQYY1223 pKa = 10.7EE1224 pKa = 4.27YY1225 pKa = 11.44LVTNSGNVVITDD1237 pKa = 5.42PITVADD1243 pKa = 4.67DD1244 pKa = 3.66KK1245 pKa = 10.61TTVTCPALPGGGLAPGGSITCTASYY1270 pKa = 9.82TITQADD1276 pKa = 3.37VDD1278 pKa = 4.25AGSVTNLATATSGTVNSNQATEE1300 pKa = 4.4TVNATRR1306 pKa = 11.84SPSLGLEE1313 pKa = 4.18KK1314 pKa = 9.88TASPLVYY1321 pKa = 10.05AAAGDD1326 pKa = 4.15VISYY1330 pKa = 10.61SYY1332 pKa = 11.63LLTNTGNVTLSAPYY1346 pKa = 9.2TVADD1350 pKa = 4.41DD1351 pKa = 4.2KK1352 pKa = 10.68TTVTCPATPGTLAPGGTVTCTATYY1376 pKa = 9.36TITQTDD1382 pKa = 3.69VNAGSVTNVATASAIFNNAAVNSAQDD1408 pKa = 3.58SATVTATQTPTLSLDD1423 pKa = 3.06KK1424 pKa = 10.63RR1425 pKa = 11.84LVSGAGFDD1433 pKa = 3.74SVGDD1437 pKa = 4.05VIQYY1441 pKa = 10.88AYY1443 pKa = 10.84DD1444 pKa = 3.47VTNSGNVTITGPITISDD1461 pKa = 3.9DD1462 pKa = 3.72KK1463 pKa = 10.6IASVTCPAGDD1473 pKa = 4.08LAPGAMVTCTASYY1486 pKa = 9.77TVTQADD1492 pKa = 3.93INTGSVTNIATAAGSFNNQPVTSNPDD1518 pKa = 3.38TVTVEE1523 pKa = 4.06ALQEE1527 pKa = 3.87PALTLDD1533 pKa = 3.41KK1534 pKa = 10.69RR1535 pKa = 11.84VVSGNPYY1542 pKa = 10.64DD1543 pKa = 3.65SVGDD1547 pKa = 3.93VVQYY1551 pKa = 10.6TYY1553 pKa = 11.62DD1554 pKa = 3.42VTNTGNLTITDD1565 pKa = 5.9PITVSDD1571 pKa = 4.4DD1572 pKa = 3.58KK1573 pKa = 11.08IATVNCPALPSGGLAPGAMLTCTASYY1599 pKa = 9.8TITQADD1605 pKa = 3.37VDD1607 pKa = 4.25AGSVTNLATATSGTVNSNQATEE1629 pKa = 4.4TVNATRR1635 pKa = 11.84SPSLGLEE1642 pKa = 4.18KK1643 pKa = 9.88TASPLVYY1650 pKa = 10.05AAAGDD1655 pKa = 4.15VISYY1659 pKa = 10.61SYY1661 pKa = 11.63LLTNTGNVTLSAPYY1675 pKa = 9.2TVADD1679 pKa = 4.41DD1680 pKa = 4.2KK1681 pKa = 10.68TTVTCPATPGTLAPGGTVTCTATYY1705 pKa = 9.36TITQTDD1711 pKa = 3.69VNAGSVTNVATASAIFNNAAVNSAQDD1737 pKa = 3.58SATVTATQTPTLSLDD1752 pKa = 3.06KK1753 pKa = 10.63RR1754 pKa = 11.84LVSGAGFDD1762 pKa = 3.74SVGDD1766 pKa = 4.05VIQYY1770 pKa = 10.88AYY1772 pKa = 10.84DD1773 pKa = 3.47VTNSGNVTITGPITISDD1790 pKa = 3.9DD1791 pKa = 3.72KK1792 pKa = 10.6IASVTCPAGDD1802 pKa = 4.08LAPGAMVTCTASYY1815 pKa = 9.77TVTQADD1821 pKa = 3.93INTGSVTNIATAAGSFNNQPVTSNPDD1847 pKa = 3.38TVTVEE1852 pKa = 4.06ALQEE1856 pKa = 3.87PALTLDD1862 pKa = 3.41KK1863 pKa = 10.69RR1864 pKa = 11.84VVSGNPYY1871 pKa = 10.64DD1872 pKa = 3.65SVGDD1876 pKa = 3.93VVQYY1880 pKa = 10.6TYY1882 pKa = 11.62DD1883 pKa = 3.42VTNTGNLTITDD1894 pKa = 5.9PITVSDD1900 pKa = 4.4DD1901 pKa = 3.58KK1902 pKa = 11.08IATVNCPALPSGGLAPGAMLTCTASYY1928 pKa = 9.84TITQADD1934 pKa = 3.82INNGSVTNVATASSGTTQSPPDD1956 pKa = 4.09TVTVTATQRR1965 pKa = 11.84PALSLDD1971 pKa = 2.97KK1972 pKa = 10.66RR1973 pKa = 11.84LLSGTTVTAVGDD1985 pKa = 4.18VIQYY1989 pKa = 10.88AYY1991 pKa = 10.66DD1992 pKa = 3.38VRR1994 pKa = 11.84NTGNVTITGPITVSDD2009 pKa = 4.08DD2010 pKa = 3.64KK2011 pKa = 11.05IATVTCPAGDD2021 pKa = 4.1LAPAAMLTCTASYY2034 pKa = 9.83TVTQADD2040 pKa = 4.31LDD2042 pKa = 4.2AGSITNIATASGTFNEE2058 pKa = 4.34QTVTSNQDD2066 pKa = 3.09SVTVEE2071 pKa = 4.36ALHH2074 pKa = 6.21EE2075 pKa = 4.14MAVVLTKK2082 pKa = 10.23IAAKK2086 pKa = 10.32RR2087 pKa = 11.84EE2088 pKa = 3.99VRR2090 pKa = 11.84VGDD2093 pKa = 3.5LVRR2096 pKa = 11.84FTVVARR2102 pKa = 11.84NVGPGPVVDD2111 pKa = 4.23ATLIDD2116 pKa = 3.69TPPRR2120 pKa = 11.84GFTFVEE2126 pKa = 5.03GSLTADD2132 pKa = 3.93DD2133 pKa = 4.69EE2134 pKa = 4.99DD2135 pKa = 5.89DD2136 pKa = 3.81NVVVSGVDD2144 pKa = 3.7PIRR2147 pKa = 11.84ISGVDD2152 pKa = 2.82IATNGTATFVYY2163 pKa = 9.6FLRR2166 pKa = 11.84VGAGVGHH2173 pKa = 6.22GTHH2176 pKa = 6.85INRR2179 pKa = 11.84VIAVDD2184 pKa = 3.75PTEE2187 pKa = 4.06HH2188 pKa = 5.81TVSNEE2193 pKa = 3.11AAAEE2197 pKa = 4.1VVIIGDD2203 pKa = 3.69PMLDD2207 pKa = 3.1EE2208 pKa = 4.38SLIVGTVFDD2217 pKa = 5.08DD2218 pKa = 4.0RR2219 pKa = 11.84NGDD2222 pKa = 4.27GIQQPGEE2229 pKa = 3.78RR2230 pKa = 11.84GIPGVRR2236 pKa = 11.84IGSVEE2241 pKa = 3.96GLIMEE2246 pKa = 4.67TDD2248 pKa = 2.98AFGRR2252 pKa = 11.84YY2253 pKa = 8.87HH2254 pKa = 7.17LVGIDD2259 pKa = 3.19GGDD2262 pKa = 3.82FSRR2265 pKa = 11.84GRR2267 pKa = 11.84NFILKK2272 pKa = 9.58VDD2274 pKa = 3.96ASTLPVGTEE2283 pKa = 3.9FTTEE2287 pKa = 3.55NPRR2290 pKa = 11.84VRR2292 pKa = 11.84RR2293 pKa = 11.84ITPGVPVRR2301 pKa = 11.84FDD2303 pKa = 3.65FGVKK2307 pKa = 10.25LPNGEE2312 pKa = 4.21MKK2314 pKa = 10.61GGRR2317 pKa = 11.84QEE2319 pKa = 4.53LDD2321 pKa = 3.2AEE2323 pKa = 4.48LGEE2326 pKa = 4.58VMFDD2330 pKa = 3.63PRR2332 pKa = 11.84SSTLKK2337 pKa = 10.78AEE2339 pKa = 4.1YY2340 pKa = 10.44LPVIDD2345 pKa = 5.05KK2346 pKa = 10.39VASKK2350 pKa = 10.37VRR2352 pKa = 11.84EE2353 pKa = 4.09YY2354 pKa = 11.14NGGRR2358 pKa = 11.84IVITAKK2364 pKa = 10.81AEE2366 pKa = 4.06EE2367 pKa = 4.19EE2368 pKa = 3.88ALAYY2372 pKa = 10.31ARR2374 pKa = 11.84ARR2376 pKa = 11.84AVQDD2380 pKa = 3.36ALRR2383 pKa = 11.84TKK2385 pKa = 10.76LEE2387 pKa = 3.91PALADD2392 pKa = 3.56RR2393 pKa = 11.84VAVEE2397 pKa = 4.45VVADD2401 pKa = 3.71TSGTMVRR2408 pKa = 11.84LDD2410 pKa = 3.55RR2411 pKa = 11.84GIHH2414 pKa = 6.1LGTFLFDD2421 pKa = 3.48TDD2423 pKa = 3.56KK2424 pKa = 11.54SVIKK2428 pKa = 9.46PQYY2431 pKa = 9.14RR2432 pKa = 11.84GLIKK2436 pKa = 10.57EE2437 pKa = 4.18IADD2440 pKa = 3.52DD2441 pKa = 4.31LNRR2444 pKa = 11.84MGRR2447 pKa = 11.84GTIGLVGHH2455 pKa = 7.23ADD2457 pKa = 3.06MRR2459 pKa = 11.84ASNEE2463 pKa = 3.67YY2464 pKa = 10.28NRR2466 pKa = 11.84YY2467 pKa = 9.65LGLRR2471 pKa = 11.84RR2472 pKa = 11.84SKK2474 pKa = 11.19AVFDD2478 pKa = 5.45AILAQLRR2485 pKa = 11.84PEE2487 pKa = 3.76VRR2489 pKa = 11.84QRR2491 pKa = 11.84VRR2493 pKa = 11.84VDD2495 pKa = 2.73ISDD2498 pKa = 4.45EE2499 pKa = 3.86IDD2501 pKa = 3.36AEE2503 pKa = 4.42TGVGDD2508 pKa = 3.73RR2509 pKa = 4.83

Molecular weight:
255.19 kDa
Isoelectric point according different methods:






Protein with the highest isoelectric point:
>tr|A0A0A0F0J3|A0A0A0F0J3_9GAMM 4Fe-4S ferredoxin-type domain-containing protein OS=Lysobacter daejeonensis GH1-9 OX=1385517 GN=N800_10895 PE=4 SV=1
MM1 pKa = 7.62KK2 pKa = 10.31ALCHH6 pKa = 6.03VIAVLVMGLPTPAWSQQAGEE26 pKa = 4.15LRR28 pKa = 11.84KK29 pKa = 9.96CVSPGGAVSFQQQPCAAGSRR49 pKa = 11.84QTSSRR54 pKa = 11.84SYY56 pKa = 9.39VAEE59 pKa = 4.09PAPTAEE65 pKa = 4.43QIRR68 pKa = 11.84ARR70 pKa = 11.84ATRR73 pKa = 11.84EE74 pKa = 3.42QVARR78 pKa = 11.84AEE80 pKa = 4.22SAEE83 pKa = 3.93LSRR86 pKa = 11.84RR87 pKa = 11.84AGTSGHH93 pKa = 6.91LSAPPGRR100 pKa = 11.84GTLHH104 pKa = 6.39RR105 pKa = 11.84VAIAKK110 pKa = 10.09DD111 pKa = 3.34DD112 pKa = 4.21AACQRR117 pKa = 11.84ARR119 pKa = 11.84RR120 pKa = 11.84HH121 pKa = 5.79RR122 pKa = 11.84DD123 pKa = 2.89EE124 pKa = 3.87TLEE127 pKa = 3.95RR128 pKa = 11.84VGLKK132 pKa = 8.79RR133 pKa = 11.84TYY135 pKa = 11.23DD136 pKa = 3.66LLRR139 pKa = 11.84ALNDD143 pKa = 3.32EE144 pKa = 4.39VARR147 pKa = 11.84ACRR150 pKa = 3.43

Molecular weight:
16.23 kDa
Isoelectric point according different methods:






Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2570

0

2570

830463

41

2509

323.1

35.08

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.135 ± 0.064

0.825 ± 0.015

5.829 ± 0.04

5.474 ± 0.04

3.376 ± 0.031

8.628 ± 0.046

2.341 ± 0.026

4.044 ± 0.035

2.932 ± 0.036

10.688 ± 0.071

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.266 ± 0.022

2.457 ± 0.035

5.271 ± 0.033

3.543 ± 0.028

7.554 ± 0.054

4.873 ± 0.037

5.082 ± 0.047

7.844 ± 0.043

1.505 ± 0.027

2.332 ± 0.031

Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski