Homoserinimonas aerilata

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Microbacteriaceae; Homoserinimonas

Average proteome isoelectric point is 5.94

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2633 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A542YHZ8|A0A542YHZ8_9MICO 2-hydroxychromene-2-carboxylate isomerase OS=Homoserinimonas aerilata OX=1162970 GN=FB562_0805 PE=4 SV=1
MM1 pKa = 7.92KK2 pKa = 10.21KK3 pKa = 10.43RR4 pKa = 11.84FMTSIAVGAVALLGLTACAGSADD27 pKa = 3.82TGDD30 pKa = 3.89NGSGDD35 pKa = 4.23GDD37 pKa = 4.05SKK39 pKa = 11.61SLTVGVFNGWPEE51 pKa = 4.14GEE53 pKa = 4.02AASYY57 pKa = 9.67LWKK60 pKa = 10.65AVLEE64 pKa = 4.25EE65 pKa = 3.93KK66 pKa = 10.76GYY68 pKa = 11.15DD69 pKa = 3.47VTLEE73 pKa = 4.02YY74 pKa = 11.15ADD76 pKa = 4.77AGPVFAGLSTGDD88 pKa = 3.42YY89 pKa = 11.18DD90 pKa = 4.34VAFDD94 pKa = 3.27GWLPLTHH101 pKa = 6.32QSYY104 pKa = 9.68MDD106 pKa = 3.64EE107 pKa = 4.57YY108 pKa = 11.2GDD110 pKa = 3.87SLEE113 pKa = 6.27DD114 pKa = 3.42LGSWNDD120 pKa = 3.72DD121 pKa = 3.02AVLTVAVNEE130 pKa = 4.38DD131 pKa = 3.56APITSLDD138 pKa = 3.68EE139 pKa = 4.55LADD142 pKa = 3.87HH143 pKa = 7.3ADD145 pKa = 3.39EE146 pKa = 4.7FGNRR150 pKa = 11.84IVGIEE155 pKa = 4.04PGAGLTKK162 pKa = 10.54AVGEE166 pKa = 4.21QTIPTYY172 pKa = 11.03GLDD175 pKa = 3.22GMEE178 pKa = 5.1FLTSSTPAMLSEE190 pKa = 4.83LSAALDD196 pKa = 3.59AGEE199 pKa = 4.25NVAVTLWRR207 pKa = 11.84PHH209 pKa = 5.02WAYY212 pKa = 10.82DD213 pKa = 3.5EE214 pKa = 4.31YY215 pKa = 10.64PIRR218 pKa = 11.84DD219 pKa = 3.72LEE221 pKa = 4.46DD222 pKa = 3.88PEE224 pKa = 4.53GTLGASEE231 pKa = 5.43GIHH234 pKa = 6.25SIARR238 pKa = 11.84SGFGDD243 pKa = 3.87EE244 pKa = 4.31FSEE247 pKa = 4.19LAGWIGDD254 pKa = 3.53WKK256 pKa = 10.79LDD258 pKa = 3.85SEE260 pKa = 4.79LLYY263 pKa = 11.06SLEE266 pKa = 3.71NAMYY270 pKa = 10.76NSGADD275 pKa = 3.22ASEE278 pKa = 4.47YY279 pKa = 10.79EE280 pKa = 4.79SIVADD285 pKa = 4.69WIAEE289 pKa = 3.93NQEE292 pKa = 4.25YY293 pKa = 11.1VDD295 pKa = 4.58GLTSS299 pKa = 3.2

Molecular weight: 31.89 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A542YA47|A0A542YA47_9MICO HAD superfamily hydrolase (TIGR01490 family) OS=Homoserinimonas aerilata OX=1162970 GN=FB562_2380 PE=3 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.42KK7 pKa = 8.47RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.22RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.87KK16 pKa = 9.7HH17 pKa = 5.84RR18 pKa = 11.84KK19 pKa = 8.56LLRR22 pKa = 11.84KK23 pKa = 7.78TRR25 pKa = 11.84HH26 pKa = 3.65QRR28 pKa = 11.84RR29 pKa = 11.84NKK31 pKa = 9.78KK32 pKa = 9.85

Molecular weight: 4.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2633

0

2633

851979

30

1985

323.6

34.6

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.998 ± 0.074

0.476 ± 0.01

5.912 ± 0.041

5.818 ± 0.044

3.236 ± 0.028

8.989 ± 0.044

1.931 ± 0.023

4.918 ± 0.038

2.269 ± 0.036

10.295 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.906 ± 0.017

2.166 ± 0.026

5.118 ± 0.036

2.919 ± 0.027

6.776 ± 0.046

6.148 ± 0.034

5.947 ± 0.037

8.835 ± 0.044

1.4 ± 0.021

1.943 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski