Planaria asexual strain-specific virus-like element type 1

Taxonomy: Viruses; unclassified viruses

Average proteome isoelectric point is 7.66

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q91S74|Q91S74_9VIRU ORF1S OS=Planaria asexual strain-specific virus-like element type 1 OX=159252 GN=ORF1S PE=4 SV=1
MM1 pKa = 7.39NLIQAISDD9 pKa = 4.01DD10 pKa = 4.0EE11 pKa = 4.28LQLFIINAMDD21 pKa = 4.45HH22 pKa = 7.01IIRR25 pKa = 11.84HH26 pKa = 5.25SVFEE30 pKa = 4.39YY31 pKa = 10.74NDD33 pKa = 2.98SHH35 pKa = 7.92RR36 pKa = 11.84NVIEE40 pKa = 5.1KK41 pKa = 8.96MLQYY45 pKa = 11.22AGVKK49 pKa = 9.9KK50 pKa = 10.57EE51 pKa = 3.92NEE53 pKa = 4.14DD54 pKa = 3.6YY55 pKa = 10.42EE56 pKa = 4.9FKK58 pKa = 10.66YY59 pKa = 9.62KK60 pKa = 10.09TMAIISILEE69 pKa = 3.94MQAGKK74 pKa = 8.87TNVILMVGKK83 pKa = 8.83PNCGKK88 pKa = 10.56SLFCNVLCAGLKK100 pKa = 9.31TGAAHH105 pKa = 7.04SMNSRR110 pKa = 11.84SNFWLQDD117 pKa = 3.58LQGKK121 pKa = 9.56DD122 pKa = 2.58IYY124 pKa = 11.32VFEE127 pKa = 4.58EE128 pKa = 4.32FSMDD132 pKa = 3.45VFNANYY138 pKa = 9.67FKK140 pKa = 11.16ALLEE144 pKa = 4.33GSMHH148 pKa = 7.0VMVEE152 pKa = 4.23KK153 pKa = 10.96KK154 pKa = 10.56NMPSVHH160 pKa = 6.46LEE162 pKa = 3.65RR163 pKa = 11.84RR164 pKa = 11.84PVITTGNEE172 pKa = 4.17FPWKK176 pKa = 9.69LVSSTAEE183 pKa = 3.75AFRR186 pKa = 11.84EE187 pKa = 3.67RR188 pKa = 11.84SLIILTDD195 pKa = 3.41SQIPFSVSADD205 pKa = 3.49PNKK208 pKa = 10.78RR209 pKa = 11.84PDD211 pKa = 4.08LLLNCKK217 pKa = 9.84NLLYY221 pKa = 10.62EE222 pKa = 4.83SIKK225 pKa = 11.04NCC227 pKa = 4.49

Molecular weight: 25.99 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q91S72|Q91S72_9VIRU ORF1L OS=Planaria asexual strain-specific virus-like element type 1 OX=159252 GN=ORF1L PE=4 SV=1
MM1 pKa = 7.83GIRR4 pKa = 11.84RR5 pKa = 11.84KK6 pKa = 10.08KK7 pKa = 7.55VTKK10 pKa = 9.48TVTPKK15 pKa = 9.82RR16 pKa = 11.84TTQHH20 pKa = 5.48IQNPAYY26 pKa = 10.28SGTPGGPQAASTPLRR41 pKa = 11.84NTPTRR46 pKa = 11.84TPPTKK51 pKa = 8.5TTPIRR56 pKa = 11.84NRR58 pKa = 11.84LRR60 pKa = 11.84SRR62 pKa = 11.84VVGRR66 pKa = 11.84NGQAVDD72 pKa = 4.31RR73 pKa = 11.84PLLSYY78 pKa = 10.32RR79 pKa = 11.84GRR81 pKa = 11.84GANFGIMHH89 pKa = 7.18NSPTNPRR96 pKa = 11.84NIMRR100 pKa = 11.84MQPRR104 pKa = 11.84VMVEE108 pKa = 3.85NILNLSNYY116 pKa = 9.69RR117 pKa = 11.84EE118 pKa = 4.25TSFGTPTQTPRR129 pKa = 11.84QTPQVTPRR137 pKa = 11.84NSPTQPPIQPPNPEE151 pKa = 4.06IPRR154 pKa = 11.84PSQPIINKK162 pKa = 8.12NTDD165 pKa = 2.83GTGPGPSGVQYY176 pKa = 10.71TKK178 pKa = 11.29DD179 pKa = 3.23NTILDD184 pKa = 3.89EE185 pKa = 4.84SSILKK190 pKa = 10.12DD191 pKa = 3.18KK192 pKa = 10.43KK193 pKa = 10.31RR194 pKa = 11.84NYY196 pKa = 9.26NLRR199 pKa = 11.84RR200 pKa = 11.84RR201 pKa = 11.84LISKK205 pKa = 8.42FKK207 pKa = 11.14NNNNKK212 pKa = 10.13NISTKK217 pKa = 10.89SNIPLIPMTSFKK229 pKa = 10.86NKK231 pKa = 9.26PQILPKK237 pKa = 9.45PQPKK241 pKa = 10.42GILKK245 pKa = 10.13PNIIPKK251 pKa = 9.96IKK253 pKa = 9.35PAYY256 pKa = 7.94PPKK259 pKa = 10.63HH260 pKa = 6.48FITNKK265 pKa = 9.37PPPIRR270 pKa = 11.84YY271 pKa = 8.9NPSSKK276 pKa = 10.22ILGWGTDD283 pKa = 2.97KK284 pKa = 11.14GVKK287 pKa = 9.2IKK289 pKa = 10.9SGVGGILGIGKK300 pKa = 7.74EE301 pKa = 4.34TTKK304 pKa = 10.62LGHH307 pKa = 6.67FIKK310 pKa = 10.05GTAKK314 pKa = 10.19AGLIIGLGLTLGQVLYY330 pKa = 9.15ATGQYY335 pKa = 8.95FQQARR340 pKa = 11.84IDD342 pKa = 4.28KK343 pKa = 9.36MAFDD347 pKa = 6.18DD348 pKa = 3.49IHH350 pKa = 8.12NEE352 pKa = 3.47IKK354 pKa = 9.88TVFPRR359 pKa = 11.84LVLMNRR365 pKa = 11.84YY366 pKa = 8.45VKK368 pKa = 10.31QFQNFKK374 pKa = 10.48FKK376 pKa = 10.94HH377 pKa = 5.75NPFKK381 pKa = 10.67DD382 pKa = 4.01TIPKK386 pKa = 9.95AIQRR390 pKa = 11.84LADD393 pKa = 3.2QALNIEE399 pKa = 4.38RR400 pKa = 11.84LKK402 pKa = 10.58IAHH405 pKa = 6.55KK406 pKa = 10.44NSYY409 pKa = 9.71FGVRR413 pKa = 11.84IPQEE417 pKa = 4.16TKK419 pKa = 10.22DD420 pKa = 3.85KK421 pKa = 10.96YY422 pKa = 10.79VNLYY426 pKa = 7.32TQILSVVNEE435 pKa = 3.95VNKK438 pKa = 9.22TVKK441 pKa = 10.24PLAIEE446 pKa = 4.32LNNLTYY452 pKa = 10.1EE453 pKa = 4.23EE454 pKa = 4.51CVEE457 pKa = 3.42IHH459 pKa = 6.21RR460 pKa = 11.84RR461 pKa = 11.84KK462 pKa = 7.6TEE464 pKa = 3.62KK465 pKa = 9.78MKK467 pKa = 11.01QEE469 pKa = 3.92MEE471 pKa = 4.2DD472 pKa = 3.87AEE474 pKa = 4.52EE475 pKa = 4.32EE476 pKa = 4.26DD477 pKa = 3.85PSKK480 pKa = 10.8IFPGPGKK487 pKa = 10.34IPLDD491 pKa = 3.86EE492 pKa = 5.0DD493 pKa = 3.3MKK495 pKa = 11.22KK496 pKa = 10.8YY497 pKa = 10.57INPHH501 pKa = 4.64TNMSYY506 pKa = 9.87TEE508 pKa = 4.43EE509 pKa = 4.05EE510 pKa = 4.56WSNLPADD517 pKa = 4.8IIQKK521 pKa = 9.74IEE523 pKa = 3.82NGEE526 pKa = 4.15QVSVGPQTSGDD537 pKa = 3.44GGIGVAEE544 pKa = 4.31NQPVPPPSISEE555 pKa = 4.02RR556 pKa = 11.84EE557 pKa = 3.88RR558 pKa = 11.84EE559 pKa = 4.3VNEE562 pKa = 4.07EE563 pKa = 3.77EE564 pKa = 5.14AKK566 pKa = 10.3QDD568 pKa = 3.65EE569 pKa = 4.45NNITSKK575 pKa = 10.93SAICPHH581 pKa = 5.98GRR583 pKa = 11.84CRR585 pKa = 11.84QILVEE590 pKa = 4.01KK591 pKa = 10.11AVRR594 pKa = 11.84STASCRR600 pKa = 11.84APAFVQIHH608 pKa = 4.55HH609 pKa = 6.01QKK611 pKa = 9.1RR612 pKa = 11.84TFF614 pKa = 3.1

Molecular weight: 69.07 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1807

165

614

301.2

34.59

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.317 ± 0.311

1.328 ± 0.346

4.483 ± 0.564

5.589 ± 0.527

4.815 ± 0.904

5.589 ± 0.727

2.546 ± 0.264

6.807 ± 0.808

7.305 ± 0.83

7.914 ± 1.178

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.21 ± 0.56

6.309 ± 0.708

6.53 ± 1.369

4.87 ± 0.533

5.811 ± 0.433

5.811 ± 0.503

6.032 ± 0.827

5.921 ± 0.802

1.051 ± 0.374

3.763 ± 0.659
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski