Canada goose coronavirus

Taxonomy: Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Gammacoronavirus; unclassified Gammacoronavirus

Average proteome isoelectric point is 7.12

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 16 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4D6FUX7|A0A4D6FUX7_9GAMC Envelope protein OS=Canada goose coronavirus OX=2569586 PE=4 SV=1
MM1 pKa = 7.68SDD3 pKa = 4.81DD4 pKa = 4.13SSCCIHH10 pKa = 6.43NPCLSEE16 pKa = 3.51WCVYY20 pKa = 10.29CNPPDD25 pKa = 3.76EE26 pKa = 5.27DD27 pKa = 3.82VPLHH31 pKa = 5.52VLSFIINSQQEE42 pKa = 4.4LLEE45 pKa = 5.16LIDD48 pKa = 6.0LLFEE52 pKa = 4.37SS53 pKa = 4.96

Molecular weight: 6.06 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4D6FTX3|A0A4D6FTX3_9GAMC ORF3 OS=Canada goose coronavirus OX=2569586 PE=4 SV=1
MM1 pKa = 7.5NNPFATATARR11 pKa = 11.84KK12 pKa = 9.54ARR14 pKa = 11.84VVCLNRR20 pKa = 11.84GARR23 pKa = 11.84SVYY26 pKa = 9.97FLNKK30 pKa = 9.38QGLPVPCPHH39 pKa = 6.77CTTLVVRR46 pKa = 11.84GLLCEE51 pKa = 3.94EE52 pKa = 4.7HH53 pKa = 6.75QFDD56 pKa = 4.55DD57 pKa = 4.09NIYY60 pKa = 10.24IGWHH64 pKa = 5.92PEE66 pKa = 3.33GTLEE70 pKa = 4.56HH71 pKa = 6.68ARR73 pKa = 11.84TRR75 pKa = 11.84VGNRR79 pKa = 11.84MLQHH83 pKa = 6.91RR84 pKa = 11.84FF85 pKa = 3.16

Molecular weight: 9.73 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

16

0

16

13107

53

6510

819.2

91.64

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.905 ± 0.538

3.449 ± 0.212

5.547 ± 0.274

3.716 ± 0.254

5.936 ± 0.269

6.058 ± 0.323

1.747 ± 0.207

4.738 ± 0.323

5.325 ± 0.398

9.163 ± 0.409

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.915 ± 0.104

5.562 ± 0.218

3.7 ± 0.367

3.441 ± 0.587

3.464 ± 0.526

6.798 ± 0.325

5.638 ± 0.519

10.513 ± 0.933

1.381 ± 0.078

5.005 ± 0.39
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski