Beihai shrimp virus 3

Taxonomy: Viruses; Riboviria; unclassified Riboviria; unclassified RNA viruses ShiM-2016

Average proteome isoelectric point is 6.81

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    

Protein with the lowest isoelectric point:
>tr|A0A1L3KPD6|A0A1L3KPD6_9VIRU Uncharacterized protein OS=Beihai shrimp virus 3 OX=1922669 PE=4 SV=1
MM1 pKa = 7.9AEE3 pKa = 3.9TFLAILLLLLWCSPLPVLAKK23 pKa = 10.28GYY25 pKa = 9.14SPHH28 pKa = 5.11VTADD32 pKa = 3.07KK33 pKa = 9.66EE34 pKa = 4.38RR35 pKa = 11.84NMVRR39 pKa = 11.84VGAFTPRR46 pKa = 11.84SEE48 pKa = 4.37CTVTIKK54 pKa = 10.78PSGPCAWTADD64 pKa = 3.89GVGHH68 pKa = 6.95FDD70 pKa = 3.54GKK72 pKa = 10.21NVSWCPAYY80 pKa = 9.77PGNCDD85 pKa = 3.07LRR87 pKa = 11.84KK88 pKa = 7.15YY89 pKa = 9.59TEE91 pKa = 4.12MNGMRR96 pKa = 11.84TWSGCKK102 pKa = 9.56RR103 pKa = 11.84YY104 pKa = 9.99AVGNKK109 pKa = 9.36VGMCDD114 pKa = 3.78VEE116 pKa = 5.74GEE118 pKa = 4.58TFDD121 pKa = 5.18HH122 pKa = 6.63MEE124 pKa = 4.41GVCKK128 pKa = 10.41SVTEE132 pKa = 4.23MEE134 pKa = 4.62NDD136 pKa = 3.31PCLLFWGDD144 pKa = 3.25GTANEE149 pKa = 4.15ILAATEE155 pKa = 3.88QLEE158 pKa = 4.3PIYY161 pKa = 10.57TGSNYY166 pKa = 10.67KK167 pKa = 9.7MFVIEE172 pKa = 4.05WKK174 pKa = 9.03KK175 pKa = 10.78VKK177 pKa = 8.92WQFHH181 pKa = 5.86ISDD184 pKa = 3.95GGSLFRR190 pKa = 11.84MCRR193 pKa = 11.84TAWDD197 pKa = 4.3HH198 pKa = 7.15SCGTPCCRR206 pKa = 11.84AVPEE210 pKa = 4.42GEE212 pKa = 4.21RR213 pKa = 11.84LVCLITDD220 pKa = 4.02DD221 pKa = 5.81LYY223 pKa = 11.43EE224 pKa = 4.28KK225 pKa = 10.33CQYY228 pKa = 10.41QIRR231 pKa = 11.84QEE233 pKa = 4.0DD234 pKa = 4.13EE235 pKa = 3.57KK236 pKa = 11.03LQRR239 pKa = 11.84YY240 pKa = 8.72PEE242 pKa = 4.75DD243 pKa = 3.67LDD245 pKa = 3.46KK246 pKa = 11.35TEE248 pKa = 4.25PSGYY252 pKa = 10.53LPVDD256 pKa = 4.6LDD258 pKa = 3.94TKK260 pKa = 10.81DD261 pKa = 3.95LQHH264 pKa = 6.75HH265 pKa = 5.82SEE267 pKa = 4.15VHH269 pKa = 5.68FSEE272 pKa = 5.25LDD274 pKa = 3.45EE275 pKa = 5.19LVDD278 pKa = 5.6SEE280 pKa = 5.13ISCQRR285 pKa = 11.84PPLICGSRR293 pKa = 11.84RR294 pKa = 11.84YY295 pKa = 8.22TDD297 pKa = 3.3YY298 pKa = 10.94KK299 pKa = 9.69VSEE302 pKa = 4.37RR303 pKa = 11.84EE304 pKa = 3.5VWAPSTPADD313 pKa = 3.92SPNGAFKK320 pKa = 9.81CTPTDD325 pKa = 3.56PQTTSVEE332 pKa = 4.16CHH334 pKa = 5.57NFCLVKK340 pKa = 10.77ASGLCSGSEE349 pKa = 4.05SFGKK353 pKa = 10.05FFKK356 pKa = 10.53IGGGFSCHH364 pKa = 6.89CDD366 pKa = 2.65WVTKK370 pKa = 10.53ISTEE374 pKa = 4.03TIYY377 pKa = 10.74TVGTSIYY384 pKa = 9.68YY385 pKa = 10.31GEE387 pKa = 4.66HH388 pKa = 6.44EE389 pKa = 4.68CTVGAACAAANNTMRR404 pKa = 11.84RR405 pKa = 11.84IGRR408 pKa = 11.84RR409 pKa = 11.84LHH411 pKa = 6.6GVTEE415 pKa = 3.98EE416 pKa = 4.49LKK418 pKa = 11.0CKK420 pKa = 9.9STDD423 pKa = 3.37GQVDD427 pKa = 3.73CGIAEE432 pKa = 4.41CMFLVSAGNSSAVGRR447 pKa = 11.84AGDD450 pKa = 3.79QIKK453 pKa = 10.78LSVGLRR459 pKa = 11.84DD460 pKa = 3.7RR461 pKa = 11.84LRR463 pKa = 11.84GYY465 pKa = 9.85YY466 pKa = 10.17LQVKK470 pKa = 7.62LLCDD474 pKa = 3.83TPVMAGLKK482 pKa = 7.95TLKK485 pKa = 10.19KK486 pKa = 10.1QRR488 pKa = 11.84NEE490 pKa = 3.55NHH492 pKa = 5.37GSYY495 pKa = 10.67RR496 pKa = 11.84LFVPPEE502 pKa = 4.03EE503 pKa = 5.08LCDD506 pKa = 3.93CLGLRR511 pKa = 11.84SLLLDD516 pKa = 3.56DD517 pKa = 4.85CRR519 pKa = 11.84SLRR522 pKa = 11.84SAIVAMGTSAVVEE535 pKa = 4.56FLAILWCIVLIVWILSVVKK554 pKa = 10.51KK555 pKa = 9.86FLYY558 pKa = 10.25RR559 pKa = 11.84AGFLLDD565 pKa = 3.51GRR567 pKa = 11.84SVSNEE572 pKa = 3.45LLEE575 pKa = 4.32CRR577 pKa = 11.84EE578 pKa = 4.1TGEE581 pKa = 5.06LRR583 pKa = 11.84DD584 pKa = 3.64EE585 pKa = 4.01QVRR588 pKa = 11.84IIKK591 pKa = 10.34LYY593 pKa = 10.88FEE595 pKa = 4.9DD596 pKa = 6.23AITKK600 pKa = 10.4HH601 pKa = 5.63MFCSLGWWTRR611 pKa = 11.84RR612 pKa = 11.84QQRR615 pKa = 11.84ALKK618 pKa = 9.42KK619 pKa = 9.95VCLSYY624 pKa = 11.15YY625 pKa = 10.21LYY627 pKa = 10.9LIIEE631 pKa = 5.17GYY633 pKa = 9.86GKK635 pKa = 10.18NDD637 pKa = 2.27AWQRR641 pKa = 11.84SCKK644 pKa = 9.25IWKK647 pKa = 8.65QAAAGNEE654 pKa = 4.19LKK656 pKa = 11.11DD657 pKa = 3.91EE658 pKa = 4.17VLKK661 pKa = 11.24DD662 pKa = 3.68LVTSGSRR669 pKa = 11.84KK670 pKa = 8.95IGARR674 pKa = 11.84SDD676 pKa = 3.51QKK678 pKa = 9.89TLNPASLSGVLVTLVYY694 pKa = 10.77CFTLMRR700 pKa = 11.84LVGGSCEE707 pKa = 4.22TGSVDD712 pKa = 4.15VSSSVCTMASEE723 pKa = 4.53DD724 pKa = 3.86TMSCSVKK731 pKa = 8.32TTILSTIDD739 pKa = 3.31VVGKK743 pKa = 7.39STCFNLQNKK752 pKa = 5.87TTGDD756 pKa = 2.79IVGQVEE762 pKa = 4.46VEE764 pKa = 3.85YY765 pKa = 11.69SMLEE769 pKa = 4.22RR770 pKa = 11.84AWSLNNLYY778 pKa = 8.69YY779 pKa = 10.05TGHH782 pKa = 6.68WSLMTRR788 pKa = 11.84EE789 pKa = 4.97DD790 pKa = 3.53SSCYY794 pKa = 9.64NKK796 pKa = 10.2GWCTSKK802 pKa = 10.85CDD804 pKa = 4.38GKK806 pKa = 10.33MKK808 pKa = 9.98PAGYY812 pKa = 10.18RR813 pKa = 11.84NQLCVNGICKK823 pKa = 8.67VQPVSSACCYY833 pKa = 9.33WYY835 pKa = 9.18VTIFTCGSSYY845 pKa = 11.1KK846 pKa = 10.32CGGVTSMIRR855 pKa = 11.84TEE857 pKa = 3.87TDD859 pKa = 3.23GNHH862 pKa = 5.11GWVKK866 pKa = 10.38GVGRR870 pKa = 11.84GEE872 pKa = 4.29ALTTVAVSVRR882 pKa = 11.84TNGGDD887 pKa = 3.44LKK889 pKa = 11.11EE890 pKa = 4.29SDD892 pKa = 3.96GVIKK896 pKa = 10.75GVGTHH901 pKa = 6.36KK902 pKa = 10.6SGPITVRR909 pKa = 11.84VKK911 pKa = 10.78GVANLPQINFGGHH924 pKa = 6.86KK925 pKa = 9.75IYY927 pKa = 9.98ATDD930 pKa = 3.25TATYY934 pKa = 7.93LTLASDD940 pKa = 3.73INNPVVGTIGDD951 pKa = 3.91VQASSAGAWTNPPEE965 pKa = 4.9AITGEE970 pKa = 3.91EE971 pKa = 4.01HH972 pKa = 7.27LEE974 pKa = 4.0HH975 pKa = 6.84FRR977 pKa = 11.84TADD980 pKa = 3.66VVDD983 pKa = 5.51LSCSSWDD990 pKa = 3.44MSILQSEE997 pKa = 4.24PGINLLHH1004 pKa = 6.75DD1005 pKa = 3.83QFSDD1009 pKa = 3.37TQLPVVFQGSAFKK1022 pKa = 10.47EE1023 pKa = 4.28VSNEE1027 pKa = 3.65RR1028 pKa = 11.84LIEE1031 pKa = 4.13EE1032 pKa = 4.46LTGSRR1037 pKa = 11.84PLSVEE1042 pKa = 3.52IAISGTFAVKK1052 pKa = 10.15HH1053 pKa = 5.54VIKK1056 pKa = 10.11EE1057 pKa = 4.37CKK1059 pKa = 9.5PEE1061 pKa = 3.86MEE1063 pKa = 4.2FVEE1066 pKa = 4.43MKK1068 pKa = 10.82GCFSCYY1074 pKa = 10.01NPGAILTVRR1083 pKa = 11.84TRR1085 pKa = 11.84SNNPYY1090 pKa = 9.94SCVAALTTNSEE1101 pKa = 4.35HH1102 pKa = 6.35FNCPGSLEE1110 pKa = 4.15FEE1112 pKa = 4.8PGDD1115 pKa = 3.48FVEE1118 pKa = 5.55RR1119 pKa = 11.84KK1120 pKa = 8.87VSCISSEE1127 pKa = 4.12EE1128 pKa = 4.05EE1129 pKa = 3.42NDD1131 pKa = 3.52IVLTAQTRR1139 pKa = 11.84TKK1141 pKa = 10.8VSVEE1145 pKa = 3.85VTGTLLADD1153 pKa = 3.92RR1154 pKa = 11.84LLAANEE1160 pKa = 4.16LEE1162 pKa = 4.22GAEE1165 pKa = 4.26PDD1167 pKa = 3.59EE1168 pKa = 4.93SSSVLNPLGLSDD1180 pKa = 5.83LNITLISIGSVTTFVVIFILLACFCGPFRR1209 pKa = 11.84DD1210 pKa = 4.17CLVFACPCLRR1220 pKa = 11.84SLSRR1224 pKa = 11.84KK1225 pKa = 9.99LPDD1228 pKa = 3.58KK1229 pKa = 11.24LSGFKK1234 pKa = 10.79DD1235 pKa = 3.44KK1236 pKa = 10.56IDD1238 pKa = 3.79RR1239 pKa = 11.84SAEE1242 pKa = 3.86KK1243 pKa = 10.66AKK1245 pKa = 10.97VSGIKK1250 pKa = 10.24AKK1252 pKa = 9.96SEE1254 pKa = 4.21KK1255 pKa = 10.15EE1256 pKa = 3.36WGEE1259 pKa = 3.79AKK1261 pKa = 10.26KK1262 pKa = 10.71AQDD1265 pKa = 3.27NHH1267 pKa = 6.37DD1268 pKa = 3.49KK1269 pKa = 10.19VVRR1272 pKa = 11.84MRR1274 pKa = 11.84KK1275 pKa = 9.6KK1276 pKa = 10.44FGQAA1280 pKa = 2.79

Molecular weight:
141.15 kDa
Isoelectric point according different methods:






Protein with the highest isoelectric point:
>tr|A0A1L3KPD6|A0A1L3KPD6_9VIRU Uncharacterized protein OS=Beihai shrimp virus 3 OX=1922669 PE=4 SV=1
MM1 pKa = 7.69SSRR4 pKa = 11.84ISIKK8 pKa = 10.25YY9 pKa = 9.49LPEE12 pKa = 3.9VTFKK16 pKa = 10.97AANGEE21 pKa = 4.23ALFSPKK27 pKa = 9.9FEE29 pKa = 4.23RR30 pKa = 11.84TGVTSRR36 pKa = 11.84EE37 pKa = 4.25SLSGAVNRR45 pKa = 11.84ALNCMVRR52 pKa = 11.84VKK54 pKa = 10.61DD55 pKa = 3.94FQVVGHH61 pKa = 6.66AFITKK66 pKa = 10.12LIAAGHH72 pKa = 6.62DD73 pKa = 3.75PYY75 pKa = 11.72VDD77 pKa = 3.35AVVEE81 pKa = 3.99ALIQGDD87 pKa = 4.41DD88 pKa = 4.27DD89 pKa = 3.86NTLTTKK95 pKa = 11.04YY96 pKa = 8.9MVAMDD101 pKa = 4.27KK102 pKa = 10.99VAILSGIPKK111 pKa = 8.41EE112 pKa = 4.4TGSVATEE119 pKa = 3.94LKK121 pKa = 10.54VAASQLNSVNDD132 pKa = 4.93LISAMKK138 pKa = 9.9QNSSAGMSSTHH149 pKa = 5.81VVDD152 pKa = 4.95VYY154 pKa = 11.48TNVLNLSACCNGSTHH169 pKa = 7.16SYY171 pKa = 10.91LPDD174 pKa = 3.8LATNSKK180 pKa = 7.43GQKK183 pKa = 9.15MIVTAMVSRR192 pKa = 11.84PRR194 pKa = 11.84LNQRR198 pKa = 11.84DD199 pKa = 4.16RR200 pKa = 11.84DD201 pKa = 4.01LLDD204 pKa = 3.8AALNLIGLNSPDD216 pKa = 4.7HH217 pKa = 5.88IALYY221 pKa = 11.22NEE223 pKa = 4.26MQQMAGSGAAVVANNSKK240 pKa = 10.36NICYY244 pKa = 9.46PFYY247 pKa = 10.45ISLVAAMMFRR257 pKa = 11.84DD258 pKa = 3.96NKK260 pKa = 10.2TDD262 pKa = 3.26TDD264 pKa = 3.93VQSFLIPFVKK274 pKa = 9.51MAKK277 pKa = 8.11TKK279 pKa = 10.48RR280 pKa = 11.84GAATKK285 pKa = 10.21SHH287 pKa = 7.06NILQAYY293 pKa = 7.39NFPGYY298 pKa = 9.74IQGGKK303 pKa = 9.83DD304 pKa = 2.77IHH306 pKa = 7.15LNPCYY311 pKa = 9.16LTPYY315 pKa = 9.68RR316 pKa = 11.84MCRR319 pKa = 11.84ALMAAAPMPLVTNARR334 pKa = 11.84GIMMTPEE341 pKa = 4.33SIAFVLRR348 pKa = 11.84LYY350 pKa = 10.71EE351 pKa = 4.75IDD353 pKa = 3.83VEE355 pKa = 4.71LGGDD359 pKa = 3.66RR360 pKa = 11.84NINDD364 pKa = 3.4ATSIFHH370 pKa = 6.57HH371 pKa = 6.29MLVGGIGSYY380 pKa = 9.29ATTHH384 pKa = 6.04NKK386 pKa = 8.28TGNALNVTVKK396 pKa = 10.64LSGQNYY402 pKa = 7.87TPAPPMTQVMTVVAQPQPQRR422 pKa = 11.84AAAPMAPTAPPTAAVAPPPAPAPATDD448 pKa = 3.29RR449 pKa = 11.84LGNIVPTAPAPVPGTVPAPPAIAPLPGAIATSATTTVTVPQQQQPQQQQAPAQAPATTAAATPTVAVPGATAGISTNTATPSNAGNNSNAA539 pKa = 3.65

Molecular weight:
56.66 kDa
Isoelectric point according different methods:






Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

5671

312

3540

1417.8

158.07

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.018 ± 1.056

2.451 ± 0.866

5.414 ± 0.47

6.648 ± 0.977

3.527 ± 0.242

5.678 ± 0.908

2.028 ± 0.075

4.761 ± 0.083

6.048 ± 0.362

9.646 ± 0.869

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.839 ± 0.305

4.109 ± 0.378

4.303 ± 0.783

2.998 ± 0.258

5.537 ± 0.716

8.852 ± 0.431

6.524 ± 0.393

7.371 ± 0.523

1.111 ± 0.279

3.139 ± 0.277

Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski