Litorivita pollutaquae

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Litorivita

Average proteome isoelectric point is 6.15

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3171 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2V4MUX0|A0A2V4MUX0_9RHOB Uncharacterized protein OS=Litorivita pollutaquae OX=2200892 GN=DI396_08480 PE=4 SV=1
MM1 pKa = 8.12DD2 pKa = 4.77AQDD5 pKa = 3.51SAGNQATQRR14 pKa = 11.84SFVVTVTDD22 pKa = 3.62TTPPNAPVIGTMGATPDD39 pKa = 3.57SRR41 pKa = 11.84VGLEE45 pKa = 4.04GTAEE49 pKa = 4.33PGSAVAITFPDD60 pKa = 4.06GSTQSVIADD69 pKa = 3.58AGTGAFTVTSNTPQQSGVVTLVATDD94 pKa = 3.76AEE96 pKa = 5.01GNDD99 pKa = 4.14SVPTTAGFTGDD110 pKa = 4.14DD111 pKa = 3.91TPPTILIGALSGPTSGTYY129 pKa = 9.37IAAITLSEE137 pKa = 4.72DD138 pKa = 3.33STDD141 pKa = 4.5FDD143 pKa = 5.04AADD146 pKa = 3.69LTLTNATATLTGSGSDD162 pKa = 3.54YY163 pKa = 10.81TATLTPAADD172 pKa = 3.84GTVSLSVAAGVFTDD186 pKa = 4.59AAGNSNGASNTVSAVFAGVAPTVSISGAPEE216 pKa = 3.68ALAGGSSFTVAIAFSEE232 pKa = 4.68VVTGFVAADD241 pKa = 3.61ISATNATVTALTGGGVSYY259 pKa = 10.92VATVHH264 pKa = 6.95ASGTGDD270 pKa = 3.23VRR272 pKa = 11.84VAVPANVAFGATGHH286 pKa = 6.49GNLASSQVVIADD298 pKa = 3.22VSVQQTQEE306 pKa = 4.22HH307 pKa = 6.42IASYY311 pKa = 8.62MQTRR315 pKa = 11.84ANQLISNQPSLMSFLSGEE333 pKa = 4.06PRR335 pKa = 11.84GKK337 pKa = 10.77FNFAVTRR344 pKa = 11.84GAGSFDD350 pKa = 3.57VATGATGARR359 pKa = 11.84YY360 pKa = 8.2PVWAQANGSWTNDD373 pKa = 2.62GDD375 pKa = 4.23SEE377 pKa = 4.58SEE379 pKa = 4.46YY380 pKa = 11.33VFGALGGHH388 pKa = 4.73QTISEE393 pKa = 4.13NLLVGAMLQFDD404 pKa = 4.68HH405 pKa = 7.2LSEE408 pKa = 5.47DD409 pKa = 3.43EE410 pKa = 4.41GVASVRR416 pKa = 11.84GTGWMVGPYY425 pKa = 9.53FVARR429 pKa = 11.84SATQPLYY436 pKa = 10.91FEE438 pKa = 5.18GRR440 pKa = 11.84LLYY443 pKa = 11.05GEE445 pKa = 4.48TSNKK449 pKa = 9.32ISPFGTYY456 pKa = 9.63EE457 pKa = 4.1DD458 pKa = 4.53SFDD461 pKa = 3.74TTRR464 pKa = 11.84LLAQLKK470 pKa = 9.6VAGEE474 pKa = 4.08LSYY477 pKa = 11.44GRR479 pKa = 11.84TLLTPFMDD487 pKa = 4.11ASYY490 pKa = 9.26STDD493 pKa = 3.47DD494 pKa = 3.1QHH496 pKa = 9.94SYY498 pKa = 11.18VDD500 pKa = 3.75SLGNTIPGQDD510 pKa = 2.95IALGQIEE517 pKa = 4.42IGMDD521 pKa = 3.97FSMMLPVTTGDD532 pKa = 3.41LEE534 pKa = 4.27LWGGISGIWSHH545 pKa = 7.35IDD547 pKa = 3.08GSGYY551 pKa = 10.95ASTVTPDD558 pKa = 3.44YY559 pKa = 10.22EE560 pKa = 4.22GGRR563 pKa = 11.84ARR565 pKa = 11.84VEE567 pKa = 3.83LGINHH572 pKa = 6.26QDD574 pKa = 3.43SAGHH578 pKa = 6.2NFTVGTYY585 pKa = 10.24YY586 pKa = 10.9DD587 pKa = 4.23GIGANGYY594 pKa = 9.24EE595 pKa = 4.38SYY597 pKa = 11.06GLSLGYY603 pKa = 10.59EE604 pKa = 4.11MQFF607 pKa = 3.35

Molecular weight: 62.0 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2V4MNR1|A0A2V4MNR1_9RHOB Enoyl-CoA hydratase OS=Litorivita pollutaquae OX=2200892 GN=DI396_05095 PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.44RR3 pKa = 11.84TYY5 pKa = 10.31QPSNLVRR12 pKa = 11.84KK13 pKa = 8.96RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.62GFRR19 pKa = 11.84SRR21 pKa = 11.84MATKK25 pKa = 10.45AGRR28 pKa = 11.84KK29 pKa = 8.54ILNARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 9.07SLSAA44 pKa = 3.93

Molecular weight: 5.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3171

0

3171

989163

28

1826

311.9

33.79

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.632 ± 0.06

0.889 ± 0.013

6.1 ± 0.042

5.883 ± 0.039

3.669 ± 0.026

8.728 ± 0.044

2.068 ± 0.02

5.335 ± 0.029

3.47 ± 0.038

9.677 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.953 ± 0.023

2.666 ± 0.022

4.876 ± 0.028

3.183 ± 0.023

6.466 ± 0.042

5.195 ± 0.027

5.527 ± 0.03

7.128 ± 0.034

1.274 ± 0.018

2.28 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski