Aggregicoccus sp. 17bor-14

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Aggregicoccus; unclassified Aggregicoccus

Average proteome isoelectric point is 7.04

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5829 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6I2GT76|A0A6I2GT76_9DELT GGDEF domain-containing protein OS=Aggregicoccus sp. 17bor-14 OX=2583808 GN=FGE12_25110 PE=4 SV=1
MM1 pKa = 7.7RR2 pKa = 11.84AALLCAGLLALAGCGGSPDD21 pKa = 4.14PEE23 pKa = 4.19PVKK26 pKa = 9.29PTPPVTPAPPVVVDD40 pKa = 4.28ADD42 pKa = 3.78HH43 pKa = 7.51DD44 pKa = 4.61GVPSTADD51 pKa = 3.65CADD54 pKa = 4.19DD55 pKa = 4.1DD56 pKa = 4.12ATRR59 pKa = 11.84FQYY62 pKa = 11.15VSGHH66 pKa = 6.47RR67 pKa = 11.84DD68 pKa = 3.01ADD70 pKa = 3.85GDD72 pKa = 4.42GVGADD77 pKa = 3.91ALEE80 pKa = 4.23QVCAGAALPQGWVSTGGDD98 pKa = 3.74CATYY102 pKa = 10.7DD103 pKa = 3.31ATRR106 pKa = 11.84WRR108 pKa = 11.84EE109 pKa = 3.67LAVYY113 pKa = 9.49EE114 pKa = 4.6DD115 pKa = 3.76WDD117 pKa = 3.76GDD119 pKa = 3.57GRR121 pKa = 11.84TRR123 pKa = 11.84PYY125 pKa = 11.19AQTLCIGAQVPTGYY139 pKa = 8.47VTQRR143 pKa = 11.84GEE145 pKa = 4.15DD146 pKa = 3.53DD147 pKa = 4.94CSDD150 pKa = 3.73FDD152 pKa = 3.38ATAWHH157 pKa = 6.27EE158 pKa = 4.24VPLYY162 pKa = 10.7FDD164 pKa = 4.91LDD166 pKa = 3.75GDD168 pKa = 4.76GVGDD172 pKa = 4.29DD173 pKa = 4.64YY174 pKa = 12.1AMSMCLGSAPPPTYY188 pKa = 9.96MVATGGDD195 pKa = 3.97CAPRR199 pKa = 11.84DD200 pKa = 3.61ATLYY204 pKa = 10.58TMLPYY209 pKa = 10.3AYY211 pKa = 9.4RR212 pKa = 11.84DD213 pKa = 3.47ADD215 pKa = 3.64GDD217 pKa = 4.16GATVPQQGSVCSGFYY232 pKa = 10.76LPAGYY237 pKa = 9.86RR238 pKa = 11.84EE239 pKa = 4.22SAQGLDD245 pKa = 4.71CNDD248 pKa = 4.39ADD250 pKa = 3.86PSVYY254 pKa = 10.76SMQPGFPDD262 pKa = 3.85PDD264 pKa = 4.08GDD266 pKa = 4.2GVGSGEE272 pKa = 4.21SFEE275 pKa = 4.53VCAGVAMPRR284 pKa = 11.84YY285 pKa = 9.17SSRR288 pKa = 11.84RR289 pKa = 11.84SDD291 pKa = 3.32DD292 pKa = 3.78CAPQDD297 pKa = 3.5SSRR300 pKa = 11.84WEE302 pKa = 3.64QRR304 pKa = 11.84EE305 pKa = 3.82YY306 pKa = 11.38RR307 pKa = 11.84LGDD310 pKa = 3.36ADD312 pKa = 3.82GDD314 pKa = 4.01GRR316 pKa = 11.84TVPLAEE322 pKa = 4.28PASFCVGNTDD332 pKa = 3.18PQGYY336 pKa = 9.63SRR338 pKa = 11.84GTPWPDD344 pKa = 3.35DD345 pKa = 4.19CDD347 pKa = 4.01DD348 pKa = 4.42ADD350 pKa = 3.54AARR353 pKa = 11.84YY354 pKa = 8.42QVLAYY359 pKa = 10.09AYY361 pKa = 10.04RR362 pKa = 11.84DD363 pKa = 3.5ADD365 pKa = 3.59GDD367 pKa = 4.21GATVPATGSLCSGASLPAGYY387 pKa = 8.17ATQSRR392 pKa = 11.84GADD395 pKa = 3.64CDD397 pKa = 4.08DD398 pKa = 4.7ADD400 pKa = 3.72AQRR403 pKa = 11.84FVQLSGFADD412 pKa = 3.39VDD414 pKa = 3.72ADD416 pKa = 3.94GVGAGEE422 pKa = 4.03AQAFCTAGALPAGFVASSTDD442 pKa = 3.62CAAQDD447 pKa = 3.38AARR450 pKa = 11.84WRR452 pKa = 11.84TVTPGFLDD460 pKa = 3.28QDD462 pKa = 3.56GDD464 pKa = 4.11GYY466 pKa = 9.48TVVDD470 pKa = 4.41PAPTAQCIGTAPEE483 pKa = 4.32APSVLAARR491 pKa = 11.84GNDD494 pKa = 4.27CEE496 pKa = 4.7DD497 pKa = 3.51TDD499 pKa = 3.74PTRR502 pKa = 11.84FLWRR506 pKa = 11.84VFYY509 pKa = 10.68RR510 pKa = 11.84DD511 pKa = 3.2EE512 pKa = 6.4DD513 pKa = 4.37GDD515 pKa = 4.45GVGAAPRR522 pKa = 11.84LLRR525 pKa = 11.84CLATGAAPAGEE536 pKa = 4.7SPYY539 pKa = 11.33GWDD542 pKa = 5.03SDD544 pKa = 4.27DD545 pKa = 5.07ADD547 pKa = 3.94PAVQQSEE554 pKa = 4.07EE555 pKa = 4.3DD556 pKa = 3.73EE557 pKa = 5.08AVLQLLLEE565 pKa = 4.42TT566 pKa = 4.86

Molecular weight: 58.97 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6I2GLG1|A0A6I2GLG1_9DELT TIGR02266 family protein OS=Aggregicoccus sp. 17bor-14 OX=2583808 GN=FGE12_00710 PE=4 SV=1
MM1 pKa = 7.76AARR4 pKa = 11.84KK5 pKa = 7.51TSRR8 pKa = 11.84KK9 pKa = 8.11STAKK13 pKa = 10.09RR14 pKa = 11.84STGTRR19 pKa = 11.84SKK21 pKa = 10.82RR22 pKa = 11.84SGGAKK27 pKa = 9.55RR28 pKa = 11.84RR29 pKa = 11.84TGGTAAKK36 pKa = 9.97RR37 pKa = 11.84ATAKK41 pKa = 10.47RR42 pKa = 11.84STAKK46 pKa = 10.4RR47 pKa = 11.84GTARR51 pKa = 11.84KK52 pKa = 9.0SASRR56 pKa = 11.84GKK58 pKa = 8.93RR59 pKa = 11.84TAKK62 pKa = 10.2RR63 pKa = 11.84STAGKK68 pKa = 9.63RR69 pKa = 11.84VTARR73 pKa = 11.84KK74 pKa = 8.82PGARR78 pKa = 11.84RR79 pKa = 11.84TAAKK83 pKa = 8.34RR84 pKa = 11.84TSTRR88 pKa = 11.84RR89 pKa = 11.84ARR91 pKa = 11.84RR92 pKa = 3.31

Molecular weight: 9.91 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5829

0

5829

2075293

38

4099

356.0

38.32

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.817 ± 0.055

0.871 ± 0.015

4.643 ± 0.023

6.348 ± 0.038

3.174 ± 0.02

9.064 ± 0.033

2.082 ± 0.016

2.416 ± 0.027

2.594 ± 0.031

11.991 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.645 ± 0.013

1.798 ± 0.019

6.227 ± 0.033

3.591 ± 0.021

8.38 ± 0.041

5.215 ± 0.025

4.85 ± 0.028

8.001 ± 0.028

1.243 ± 0.015

2.049 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski