Capybara microvirus Cap3_SP_437

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W501|A0A4P8W501_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_437 OX=2585452 PE=4 SV=1
MM1 pKa = 7.26KK2 pKa = 10.23VYY4 pKa = 10.79EE5 pKa = 4.48GFEE8 pKa = 4.5KK9 pKa = 10.56INSFRR14 pKa = 11.84IVAIPDD20 pKa = 3.46TKK22 pKa = 10.77RR23 pKa = 11.84LFEE26 pKa = 5.7LYY28 pKa = 9.77RR29 pKa = 11.84QSPNLVGNEE38 pKa = 4.43DD39 pKa = 3.6EE40 pKa = 5.07TIDD43 pKa = 4.56LALEE47 pKa = 4.21SAQRR51 pKa = 11.84PTDD54 pKa = 3.44SMALYY59 pKa = 9.47EE60 pKa = 4.52LYY62 pKa = 10.62SRR64 pKa = 11.84SIDD67 pKa = 3.75SEE69 pKa = 4.3

Molecular weight: 8.0 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W542|A0A4P8W542_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_437 OX=2585452 PE=4 SV=1
MM1 pKa = 7.64KK2 pKa = 10.14EE3 pKa = 3.95STKK6 pKa = 10.33TALKK10 pKa = 10.26EE11 pKa = 3.56LAKK14 pKa = 10.75CILTALIAFITAILSSSCGTTRR36 pKa = 11.84AVVTNKK42 pKa = 10.22AEE44 pKa = 4.09QTNTEE49 pKa = 3.99IKK51 pKa = 9.3ITTNNPSTISVDD63 pKa = 3.32PNTTIDD69 pKa = 3.97LYY71 pKa = 11.48KK72 pKa = 10.56KK73 pKa = 10.55

Molecular weight: 7.86 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1626

69

635

271.0

31.04

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.273 ± 1.484

1.415 ± 0.62

6.027 ± 0.605

5.351 ± 1.082

3.875 ± 1.086

4.121 ± 0.473

2.276 ± 0.747

6.581 ± 0.737

6.335 ± 1.464

7.688 ± 0.461

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.46 ± 0.337

8.18 ± 0.433

4.059 ± 0.653

4.182 ± 0.683

4.736 ± 0.403

9.102 ± 1.354

5.351 ± 1.494

4.736 ± 0.77

0.677 ± 0.28

6.581 ± 0.903
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski