Amino acid dipepetide frequency for Wenzhou shrimp virus 5

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
5.202AlaAla: 5.202 ± 0.662
0.4AlaCys: 0.4 ± 0.218
5.202AlaAsp: 5.202 ± 2.234
6.403AlaGlu: 6.403 ± 1.316
1.601AlaPhe: 1.601 ± 0.148
4.402AlaGly: 4.402 ± 0.498
1.601AlaHis: 1.601 ± 0.872
6.002AlaIle: 6.002 ± 1.098
4.802AlaLys: 4.802 ± 0.444
6.403AlaLeu: 6.403 ± 0.132
1.2AlaMet: 1.2 ± 0.07
1.601AlaAsn: 1.601 ± 0.576
4.402AlaPro: 4.402 ± 1.222
3.201AlaGln: 3.201 ± 1.876
2.801AlaArg: 2.801 ± 1.526
4.002AlaSer: 4.002 ± 2.18
6.002AlaThr: 6.002 ± 1.098
4.002AlaVal: 4.002 ± 1.456
1.601AlaTrp: 1.601 ± 0.148
3.201AlaTyr: 3.201 ± 0.296
0.0AlaXaa: 0.0 ± 0.0
Cys
1.601CysAla: 1.601 ± 0.872
0.0CysCys: 0.0 ± 0.0
0.4CysAsp: 0.4 ± 0.218
1.601CysGlu: 1.601 ± 0.872
0.8CysPhe: 0.8 ± 0.436
2.001CysGly: 2.001 ± 0.366
0.0CysHis: 0.0 ± 0.0
0.4CysIle: 0.4 ± 0.218
0.4CysLys: 0.4 ± 0.218
1.601CysLeu: 1.601 ± 0.576
0.4CysMet: 0.4 ± 0.506
1.2CysAsn: 1.2 ± 0.07
0.0CysPro: 0.0 ± 0.0
0.4CysGln: 0.4 ± 0.218
0.8CysArg: 0.8 ± 0.436
0.4CysSer: 0.4 ± 0.506
0.8CysThr: 0.8 ± 0.436
0.8CysVal: 0.8 ± 0.288
0.0CysTrp: 0.0 ± 0.0
0.4CysTyr: 0.4 ± 0.506
0.0CysXaa: 0.0 ± 0.0
Asp
2.801AspAla: 2.801 ± 1.526
1.2AspCys: 1.2 ± 0.654
2.401AspAsp: 2.401 ± 0.864
5.602AspGlu: 5.602 ± 1.604
1.601AspPhe: 1.601 ± 0.148
4.802AspGly: 4.802 ± 0.444
2.001AspHis: 2.001 ± 0.358
4.402AspIle: 4.402 ± 0.95
1.601AspLys: 1.601 ± 0.872
6.403AspLeu: 6.403 ± 0.592
0.8AspMet: 0.8 ± 1.264
3.201AspAsn: 3.201 ± 1.152
2.001AspPro: 2.001 ± 1.082
2.801AspGln: 2.801 ± 1.526
1.601AspArg: 1.601 ± 0.148
3.601AspSer: 3.601 ± 1.658
6.803AspThr: 6.803 ± 1.362
4.402AspVal: 4.402 ± 0.498
0.0AspTrp: 0.0 ± 0.0
2.001AspTyr: 2.001 ± 1.082
0.0AspXaa: 0.0 ± 0.0
Glu
6.002GluAla: 6.002 ± 1.822
1.2GluCys: 1.2 ± 0.07
4.002GluAsp: 4.002 ± 0.008
3.601GluGlu: 3.601 ± 1.238
2.001GluPhe: 2.001 ± 0.358
1.601GluGly: 1.601 ± 0.576
1.2GluHis: 1.2 ± 0.654
4.802GluIle: 4.802 ± 1.168
2.401GluLys: 2.401 ± 0.584
2.401GluLeu: 2.401 ± 0.584
2.001GluMet: 2.001 ± 0.366
2.801GluAsn: 2.801 ± 1.526
2.401GluPro: 2.401 ± 0.14
1.2GluGln: 1.2 ± 0.654
3.601GluArg: 3.601 ± 1.238
2.001GluSer: 2.001 ± 0.366
4.802GluThr: 4.802 ± 0.444
5.602GluVal: 5.602 ± 0.88
2.401GluTrp: 2.401 ± 1.308
3.201GluTyr: 3.201 ± 0.296
0.0GluXaa: 0.0 ± 0.0
Phe
3.601PheAla: 3.601 ± 1.238
0.0PheCys: 0.0 ± 0.0
3.601PheAsp: 3.601 ± 0.21
1.601PheGlu: 1.601 ± 0.148
1.601PhePhe: 1.601 ± 0.576
2.001PheGly: 2.001 ± 1.082
1.601PheHis: 1.601 ± 0.576
1.2PheIle: 1.2 ± 0.654
2.401PheLys: 2.401 ± 0.584
3.201PheLeu: 3.201 ± 0.296
0.4PheMet: 0.4 ± 0.218
5.202PheAsn: 5.202 ± 0.786
1.601PhePro: 1.601 ± 1.3
1.601PheGln: 1.601 ± 0.148
2.401PheArg: 2.401 ± 0.584
3.601PheSer: 3.601 ± 0.21
2.001PheThr: 2.001 ± 0.358
2.801PheVal: 2.801 ± 0.646
0.0PheTrp: 0.0 ± 0.0
1.2PheTyr: 1.2 ± 0.07
0.0PheXaa: 0.0 ± 0.0
Gly
5.202GlyAla: 5.202 ± 0.662
1.2GlyCys: 1.2 ± 0.07
6.403GlyAsp: 6.403 ± 0.132
5.202GlyGlu: 5.202 ± 0.062
2.801GlyPhe: 2.801 ± 0.646
2.401GlyGly: 2.401 ± 0.864
0.8GlyHis: 0.8 ± 0.436
3.601GlyIle: 3.601 ± 0.21
5.202GlyLys: 5.202 ± 1.386
5.202GlyLeu: 5.202 ± 0.662
2.801GlyMet: 2.801 ± 1.526
2.001GlyAsn: 2.001 ± 1.082
1.2GlyPro: 1.2 ± 1.518
2.001GlyGln: 2.001 ± 1.09
2.801GlyArg: 2.801 ± 0.802
2.401GlySer: 2.401 ± 0.14
1.2GlyThr: 1.2 ± 0.07
6.002GlyVal: 6.002 ± 3.245
0.4GlyTrp: 0.4 ± 0.506
2.001GlyTyr: 2.001 ± 0.358
0.0GlyXaa: 0.0 ± 0.0
His
0.8HisAla: 0.8 ± 0.288
0.4HisCys: 0.4 ± 0.218
2.001HisAsp: 2.001 ± 0.366
0.4HisGlu: 0.4 ± 0.218
0.4HisPhe: 0.4 ± 0.218
1.601HisGly: 1.601 ± 0.872
1.601HisHis: 1.601 ± 0.872
0.0HisIle: 0.0 ± 0.0
0.8HisLys: 0.8 ± 0.288
1.2HisLeu: 1.2 ± 0.07
0.8HisMet: 0.8 ± 0.436
0.8HisAsn: 0.8 ± 0.288
1.2HisPro: 1.2 ± 0.794
0.8HisGln: 0.8 ± 0.436
0.8HisArg: 0.8 ± 0.436
1.2HisSer: 1.2 ± 0.654
1.2HisThr: 1.2 ± 0.794
2.001HisVal: 2.001 ± 0.358
0.0HisTrp: 0.0 ± 0.0
1.601HisTyr: 1.601 ± 0.872
0.0HisXaa: 0.0 ± 0.0
Ile
4.402IleAla: 4.402 ± 1.222
0.4IleCys: 0.4 ± 0.218
4.002IleAsp: 4.002 ± 0.716
2.001IleGlu: 2.001 ± 0.366
2.001IlePhe: 2.001 ± 0.366
1.601IleGly: 1.601 ± 0.148
2.001IleHis: 2.001 ± 1.09
2.801IleIle: 2.801 ± 0.078
6.403IleLys: 6.403 ± 0.592
4.002IleLeu: 4.002 ± 0.008
2.801IleMet: 2.801 ± 1.526
2.801IleAsn: 2.801 ± 0.078
2.801IlePro: 2.801 ± 0.646
2.401IleGln: 2.401 ± 1.588
2.401IleArg: 2.401 ± 0.584
3.601IleSer: 3.601 ± 1.238
3.601IleThr: 3.601 ± 0.514
6.002IleVal: 6.002 ± 2.546
0.8IleTrp: 0.8 ± 0.288
3.601IleTyr: 3.601 ± 1.962
0.0IleXaa: 0.0 ± 0.0
Lys
2.801LysAla: 2.801 ± 0.646
1.2LysCys: 1.2 ± 0.654
4.002LysAsp: 4.002 ± 1.456
4.002LysGlu: 4.002 ± 2.18
2.801LysPhe: 2.801 ± 2.817
4.002LysGly: 4.002 ± 0.732
0.4LysHis: 0.4 ± 0.506
5.602LysIle: 5.602 ± 0.88
5.202LysLys: 5.202 ± 2.11
5.602LysLeu: 5.602 ± 2.328
1.2LysMet: 1.2 ± 0.654
1.601LysAsn: 1.601 ± 0.148
4.802LysPro: 4.802 ± 0.444
0.4LysGln: 0.4 ± 0.218
1.2LysArg: 1.2 ± 0.654
5.602LysSer: 5.602 ± 0.156
6.803LysThr: 6.803 ± 0.086
5.602LysVal: 5.602 ± 1.292
0.0LysTrp: 0.0 ± 0.0
0.8LysTyr: 0.8 ± 0.436
0.0LysXaa: 0.0 ± 0.0
Leu
7.603LeuAla: 7.603 ± 0.926
1.2LeuCys: 1.2 ± 0.654
3.601LeuAsp: 3.601 ± 1.962
4.402LeuGlu: 4.402 ± 0.226
3.601LeuPhe: 3.601 ± 1.962
3.201LeuGly: 3.201 ± 1.02
0.8LeuHis: 0.8 ± 0.436
2.001LeuIle: 2.001 ± 0.366
4.802LeuLys: 4.802 ± 1.168
4.802LeuLeu: 4.802 ± 0.444
2.801LeuMet: 2.801 ± 0.802
4.802LeuAsn: 4.802 ± 0.28
4.402LeuPro: 4.402 ± 1.946
2.801LeuGln: 2.801 ± 0.078
2.401LeuArg: 2.401 ± 0.864
7.203LeuSer: 7.203 ± 0.304
6.403LeuThr: 6.403 ± 2.303
5.602LeuVal: 5.602 ± 0.568
2.001LeuTrp: 2.001 ± 1.082
2.401LeuTyr: 2.401 ± 0.14
0.0LeuXaa: 0.0 ± 0.0
Met
2.001MetAla: 2.001 ± 1.09
0.8MetCys: 0.8 ± 0.288
2.001MetAsp: 2.001 ± 0.358
1.601MetGlu: 1.601 ± 0.148
0.4MetPhe: 0.4 ± 0.218
2.801MetGly: 2.801 ± 1.37
0.0MetHis: 0.0 ± 0.0
2.001MetIle: 2.001 ± 1.09
3.201MetLys: 3.201 ± 1.744
1.2MetLeu: 1.2 ± 0.654
1.2MetMet: 1.2 ± 0.654
0.0MetAsn: 0.0 ± 0.0
0.8MetPro: 0.8 ± 0.436
1.601MetGln: 1.601 ± 0.148
2.801MetArg: 2.801 ± 2.094
2.001MetSer: 2.001 ± 0.358
0.8MetThr: 0.8 ± 0.436
2.801MetVal: 2.801 ± 0.646
0.8MetTrp: 0.8 ± 0.436
2.001MetTyr: 2.001 ± 0.366
0.0MetXaa: 0.0 ± 0.0
Asn
1.601AsnAla: 1.601 ± 1.3
1.2AsnCys: 1.2 ± 0.654
4.402AsnAsp: 4.402 ± 0.226
2.401AsnGlu: 2.401 ± 0.14
3.601AsnPhe: 3.601 ± 0.21
1.2AsnGly: 1.2 ± 0.07
1.2AsnHis: 1.2 ± 0.794
2.001AsnIle: 2.001 ± 1.082
1.2AsnLys: 1.2 ± 0.794
2.401AsnLeu: 2.401 ± 0.14
1.2AsnMet: 1.2 ± 0.07
2.801AsnAsn: 2.801 ± 0.646
2.401AsnPro: 2.401 ± 0.584
3.601AsnGln: 3.601 ± 0.514
1.2AsnArg: 1.2 ± 0.07
3.201AsnSer: 3.201 ± 0.296
5.602AsnThr: 5.602 ± 2.016
3.201AsnVal: 3.201 ± 0.428
0.4AsnTrp: 0.4 ± 0.218
1.2AsnTyr: 1.2 ± 0.794
0.0AsnXaa: 0.0 ± 0.0
Pro
3.601ProAla: 3.601 ± 1.658
0.4ProCys: 0.4 ± 0.506
2.001ProAsp: 2.001 ± 1.082
2.001ProGlu: 2.001 ± 0.366
3.201ProPhe: 3.201 ± 1.876
5.602ProGly: 5.602 ± 2.016
1.2ProHis: 1.2 ± 0.654
3.601ProIle: 3.601 ± 0.21
2.001ProLys: 2.001 ± 1.09
4.802ProLeu: 4.802 ± 1.004
1.2ProMet: 1.2 ± 0.794
1.601ProAsn: 1.601 ± 0.576
1.2ProPro: 1.2 ± 1.518
2.001ProGln: 2.001 ± 0.366
1.601ProArg: 1.601 ± 0.576
1.601ProSer: 1.601 ± 0.148
4.402ProThr: 4.402 ± 0.226
3.601ProVal: 3.601 ± 1.658
0.4ProTrp: 0.4 ± 0.218
1.601ProTyr: 1.601 ± 0.576
0.0ProXaa: 0.0 ± 0.0
Gln
2.001GlnAla: 2.001 ± 1.09
0.8GlnCys: 0.8 ± 0.288
1.601GlnAsp: 1.601 ± 0.148
3.201GlnGlu: 3.201 ± 0.296
2.401GlnPhe: 2.401 ± 0.584
2.401GlnGly: 2.401 ± 0.584
0.0GlnHis: 0.0 ± 0.0
3.601GlnIle: 3.601 ± 0.21
0.8GlnLys: 0.8 ± 0.436
6.002GlnLeu: 6.002 ± 0.35
2.401GlnMet: 2.401 ± 1.588
0.8GlnAsn: 0.8 ± 0.288
1.601GlnPro: 1.601 ± 0.148
2.401GlnGln: 2.401 ± 1.588
0.8GlnArg: 0.8 ± 0.288
2.001GlnSer: 2.001 ± 0.358
2.001GlnThr: 2.001 ± 0.358
3.601GlnVal: 3.601 ± 0.934
0.4GlnTrp: 0.4 ± 0.218
1.2GlnTyr: 1.2 ± 0.654
0.0GlnXaa: 0.0 ± 0.0
Arg
2.801ArgAla: 2.801 ± 0.078
0.4ArgCys: 0.4 ± 0.506
0.4ArgAsp: 0.4 ± 0.218
2.001ArgGlu: 2.001 ± 1.09
0.8ArgPhe: 0.8 ± 0.288
4.002ArgGly: 4.002 ± 0.716
0.4ArgHis: 0.4 ± 0.218
3.601ArgIle: 3.601 ± 0.514
3.201ArgLys: 3.201 ± 1.02
1.2ArgLeu: 1.2 ± 0.07
1.601ArgMet: 1.601 ± 0.148
1.2ArgAsn: 1.2 ± 0.654
3.601ArgPro: 3.601 ± 1.238
1.601ArgGln: 1.601 ± 0.576
4.002ArgArg: 4.002 ± 2.18
2.401ArgSer: 2.401 ± 0.584
2.401ArgThr: 2.401 ± 0.584
4.402ArgVal: 4.402 ± 0.226
0.4ArgTrp: 0.4 ± 0.506
2.001ArgTyr: 2.001 ± 0.366
0.0ArgXaa: 0.0 ± 0.0
Ser
6.403SerAla: 6.403 ± 0.592
0.4SerCys: 0.4 ± 0.506
2.801SerAsp: 2.801 ± 0.646
4.802SerGlu: 4.802 ± 1.168
3.201SerPhe: 3.201 ± 0.428
3.601SerGly: 3.601 ± 0.934
0.0SerHis: 0.0 ± 0.0
5.602SerIle: 5.602 ± 0.156
3.601SerLys: 3.601 ± 0.934
2.001SerLeu: 2.001 ± 0.366
2.401SerMet: 2.401 ± 0.864
4.802SerAsn: 4.802 ± 1.728
1.601SerPro: 1.601 ± 0.148
2.001SerGln: 2.001 ± 0.358
2.801SerArg: 2.801 ± 0.078
3.201SerSer: 3.201 ± 1.152
3.601SerThr: 3.601 ± 0.21
4.002SerVal: 4.002 ± 0.008
1.601SerTrp: 1.601 ± 0.576
1.601SerTyr: 1.601 ± 0.148
0.0SerXaa: 0.0 ± 0.0
Thr
6.002ThrAla: 6.002 ± 0.374
0.8ThrCys: 0.8 ± 0.288
4.002ThrAsp: 4.002 ± 0.008
1.601ThrGlu: 1.601 ± 0.148
4.402ThrPhe: 4.402 ± 0.95
4.402ThrGly: 4.402 ± 0.498
2.401ThrHis: 2.401 ± 0.864
4.802ThrIle: 4.802 ± 0.444
6.803ThrLys: 6.803 ± 3.533
10.004ThrLeu: 10.004 ± 1.106
2.401ThrMet: 2.401 ± 0.584
3.201ThrAsn: 3.201 ± 1.152
2.401ThrPro: 2.401 ± 0.14
3.201ThrGln: 3.201 ± 1.152
2.801ThrArg: 2.801 ± 0.802
4.002ThrSer: 4.002 ± 1.44
6.803ThrThr: 6.803 ± 0.638
3.201ThrVal: 3.201 ± 1.152
1.2ThrTrp: 1.2 ± 0.07
3.201ThrTyr: 3.201 ± 0.428
0.0ThrXaa: 0.0 ± 0.0
Val
5.602ValAla: 5.602 ± 0.156
1.601ValCys: 1.601 ± 0.872
4.802ValAsp: 4.802 ± 0.444
3.201ValGlu: 3.201 ± 0.296
2.001ValPhe: 2.001 ± 0.366
5.602ValGly: 5.602 ± 0.156
1.2ValHis: 1.2 ± 0.654
2.401ValIle: 2.401 ± 0.584
6.002ValLys: 6.002 ± 0.374
4.802ValLeu: 4.802 ± 2.451
0.8ValMet: 0.8 ± 0.436
4.402ValAsn: 4.402 ± 0.95
6.403ValPro: 6.403 ± 2.303
3.601ValGln: 3.601 ± 0.21
3.201ValArg: 3.201 ± 1.744
6.403ValSer: 6.403 ± 5.199
5.202ValThr: 5.202 ± 1.51
3.201ValVal: 3.201 ± 1.152
0.0ValTrp: 0.0 ± 0.0
2.801ValTyr: 2.801 ± 1.37
0.0ValXaa: 0.0 ± 0.0
Trp
0.8TrpAla: 0.8 ± 0.436
0.4TrpCys: 0.4 ± 0.218
0.4TrpAsp: 0.4 ± 0.506
0.4TrpGlu: 0.4 ± 0.218
0.4TrpPhe: 0.4 ± 0.218
0.0TrpGly: 0.0 ± 0.0
0.4TrpHis: 0.4 ± 0.218
0.8TrpIle: 0.8 ± 0.436
1.2TrpLys: 1.2 ± 0.07
1.2TrpLeu: 1.2 ± 0.07
0.4TrpMet: 0.4 ± 0.218
0.8TrpAsn: 0.8 ± 0.288
0.4TrpPro: 0.4 ± 0.218
0.0TrpGln: 0.0 ± 0.0
0.4TrpArg: 0.4 ± 0.506
0.4TrpSer: 0.4 ± 0.218
2.001TrpThr: 2.001 ± 0.366
0.8TrpVal: 0.8 ± 0.288
0.0TrpTrp: 0.0 ± 0.0
2.001TrpTyr: 2.001 ± 1.806
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.201TyrAla: 3.201 ± 0.296
0.0TyrCys: 0.0 ± 0.0
2.401TyrAsp: 2.401 ± 0.584
3.201TyrGlu: 3.201 ± 0.296
2.001TyrPhe: 2.001 ± 0.358
3.601TyrGly: 3.601 ± 1.962
0.8TyrHis: 0.8 ± 0.288
1.2TyrIle: 1.2 ± 0.07
1.601TyrLys: 1.601 ± 0.872
2.401TyrLeu: 2.401 ± 0.864
1.601TyrMet: 1.601 ± 0.138
0.4TyrAsn: 0.4 ± 0.506
2.401TyrPro: 2.401 ± 1.588
2.401TyrGln: 2.401 ± 0.14
2.001TyrArg: 2.001 ± 0.358
1.2TyrSer: 1.2 ± 0.794
5.202TyrThr: 5.202 ± 1.51
1.601TyrVal: 1.601 ± 0.872
0.8TyrTrp: 0.8 ± 0.288
0.8TyrTyr: 0.8 ± 0.436
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (2500 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski