Lautropia mirabilis ATCC 51599

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia; Lautropia mirabilis

Average proteome isoelectric point is 6.82

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2665 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|E7RU53|E7RU53_9BURK Serine hydroxymethyltransferase OS=Lautropia mirabilis ATCC 51599 OX=887898 GN=glyA PE=3 SV=1
MM1 pKa = 7.65SEE3 pKa = 4.12VSEE6 pKa = 4.47MPPPLLFTDD15 pKa = 4.17SAATKK20 pKa = 9.86VGEE23 pKa = 4.65LIMEE27 pKa = 4.98EE28 pKa = 4.36GNPDD32 pKa = 2.93LKK34 pKa = 11.13LRR36 pKa = 11.84VFVQGGGCSGFQYY49 pKa = 10.98GFTFDD54 pKa = 3.92EE55 pKa = 5.44DD56 pKa = 3.75VAEE59 pKa = 5.41DD60 pKa = 3.72DD61 pKa = 4.4TVMEE65 pKa = 4.57KK66 pKa = 10.93NGVTLLIDD74 pKa = 3.64AMSYY78 pKa = 10.32QYY80 pKa = 11.5LVGAEE85 pKa = 4.01IDD87 pKa = 4.05YY88 pKa = 11.2KK89 pKa = 11.38DD90 pKa = 4.78DD91 pKa = 3.43LHH93 pKa = 7.53GSQFVIKK100 pKa = 10.02NPNAATTCGCGSSFSAA116 pKa = 4.79

Molecular weight: 12.48 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|E7RZP2|E7RZP2_9BURK Uncharacterized protein OS=Lautropia mirabilis ATCC 51599 OX=887898 GN=HMPREF0551_2156 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.36RR3 pKa = 11.84TYY5 pKa = 10.17QPSVCRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.78RR14 pKa = 11.84THH16 pKa = 6.44GFLVRR21 pKa = 11.84QKK23 pKa = 10.8SRR25 pKa = 11.84GGRR28 pKa = 11.84AVLRR32 pKa = 11.84ARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.72GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.19 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2665

0

2665

918189

39

2788

344.5

37.49

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.041 ± 0.064

0.854 ± 0.014

5.527 ± 0.038

5.319 ± 0.051

3.246 ± 0.03

8.36 ± 0.055

2.353 ± 0.024

4.444 ± 0.039

3.052 ± 0.035

10.582 ± 0.066

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.493 ± 0.022

2.715 ± 0.028

5.649 ± 0.037

4.379 ± 0.036

7.256 ± 0.05

5.631 ± 0.036

5.228 ± 0.045

7.253 ± 0.042

1.445 ± 0.02

2.173 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski