Yellowstone lake phycodnavirus 3

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; Algavirales; Phycodnaviridae; Prasinovirus; unclassified Prasinovirus

Average proteome isoelectric point is 7.09

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 236 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0P0YNP1|A0A0P0YNP1_9PHYC RING-type domain-containing protein OS=Yellowstone lake phycodnavirus 3 OX=1586715 PE=4 SV=1
MM1 pKa = 7.43SPNAYY6 pKa = 9.05VHH8 pKa = 6.67WDD10 pKa = 3.36DD11 pKa = 4.75EE12 pKa = 4.31KK13 pKa = 11.31RR14 pKa = 11.84LLFGFQGEE22 pKa = 4.58AEE24 pKa = 4.17HH25 pKa = 6.41EE26 pKa = 4.34KK27 pKa = 10.72PVFTWTYY34 pKa = 8.67STFEE38 pKa = 4.09EE39 pKa = 4.9YY40 pKa = 10.95LNEE43 pKa = 4.17ACTPSMYY50 pKa = 10.81QFMANYY56 pKa = 9.27IIEE59 pKa = 4.93EE60 pKa = 3.92ISKK63 pKa = 11.06DD64 pKa = 3.57EE65 pKa = 4.34LYY67 pKa = 10.68EE68 pKa = 3.95LQGGDD73 pKa = 3.75YY74 pKa = 10.93CPGRR78 pKa = 11.84LEE80 pKa = 4.15EE81 pKa = 4.36EE82 pKa = 4.13AVDD85 pKa = 4.92AYY87 pKa = 11.16FDD89 pKa = 3.96LPINEE94 pKa = 4.75RR95 pKa = 11.84IEE97 pKa = 4.03LHH99 pKa = 5.51NQEE102 pKa = 5.13LLNLYY107 pKa = 10.29AEE109 pKa = 4.79RR110 pKa = 11.84DD111 pKa = 3.41RR112 pKa = 11.84ATGKK116 pKa = 9.72EE117 pKa = 3.68AAFIDD122 pKa = 3.93ACLDD126 pKa = 3.39DD127 pKa = 4.99HH128 pKa = 7.53CPFDD132 pKa = 4.3VDD134 pKa = 3.74SPIYY138 pKa = 10.65VEE140 pKa = 4.09YY141 pKa = 10.63CQWCRR146 pKa = 11.84KK147 pKa = 7.24QTEE150 pKa = 3.84KK151 pKa = 7.96WTKK154 pKa = 9.63IVARR158 pKa = 11.84LADD161 pKa = 4.87EE162 pKa = 3.95IHH164 pKa = 6.87EE165 pKa = 4.37EE166 pKa = 4.25EE167 pKa = 4.79DD168 pKa = 3.19WHH170 pKa = 8.37SGAEE174 pKa = 4.0AGASDD179 pKa = 5.26LEE181 pKa = 4.45TDD183 pKa = 3.38EE184 pKa = 6.15HH185 pKa = 6.75YY186 pKa = 11.41DD187 pKa = 3.57PMNEE191 pKa = 3.77

Molecular weight: 22.43 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0N7KVY5|A0A0N7KVY5_9PHYC Uncharacterized protein OS=Yellowstone lake phycodnavirus 3 OX=1586715 PE=4 SV=1
MM1 pKa = 6.04TTTRR5 pKa = 11.84IRR7 pKa = 11.84RR8 pKa = 11.84TTSPARR14 pKa = 11.84TAKK17 pKa = 8.95KK18 pKa = 7.55TASPARR24 pKa = 11.84TASPANKK31 pKa = 9.76RR32 pKa = 11.84PRR34 pKa = 11.84NAPNPWAPKK43 pKa = 7.98YY44 pKa = 8.69TWAPWGTSGVVHH56 pKa = 6.75DD57 pKa = 4.59NCYY60 pKa = 11.01DD61 pKa = 3.52YY62 pKa = 11.94AFGSFSNNRR71 pKa = 11.84TEE73 pKa = 3.96KK74 pKa = 10.39SVPGVRR80 pKa = 11.84AKK82 pKa = 10.95LNSNGMNFRR91 pKa = 11.84TCDD94 pKa = 3.77GIAKK98 pKa = 9.83RR99 pKa = 11.84VLADD103 pKa = 3.43NPGNVYY109 pKa = 10.57KK110 pKa = 10.42MKK112 pKa = 10.86SGDD115 pKa = 3.93EE116 pKa = 3.96KK117 pKa = 10.95PKK119 pKa = 10.16AGFYY123 pKa = 10.9KK124 pKa = 10.35VMCFVAPTNDD134 pKa = 3.4FGNSTGDD141 pKa = 3.19FHH143 pKa = 6.94WYY145 pKa = 10.31KK146 pKa = 10.28EE147 pKa = 3.99ISAIRR152 pKa = 11.84YY153 pKa = 7.43KK154 pKa = 10.2IRR156 pKa = 11.84RR157 pKa = 11.84ADD159 pKa = 3.79TIMGMAKK166 pKa = 10.07FFHH169 pKa = 5.89VTPKK173 pKa = 9.93TIRR176 pKa = 11.84DD177 pKa = 4.1AIAKK181 pKa = 9.37GRR183 pKa = 11.84ASANANNGRR192 pKa = 11.84VANKK196 pKa = 8.59NTDD199 pKa = 3.32LHH201 pKa = 6.51VLNSMSAASRR211 pKa = 11.84NKK213 pKa = 8.76MPVPVGRR220 pKa = 11.84VIDD223 pKa = 4.05FPVKK227 pKa = 10.15LWSHH231 pKa = 4.92KK232 pKa = 9.14TGWAGGPLIVDD243 pKa = 4.09ASGKK247 pKa = 9.06TITDD251 pKa = 3.08PRR253 pKa = 11.84RR254 pKa = 11.84CDD256 pKa = 3.12RR257 pKa = 11.84KK258 pKa = 8.82FTPGFHH264 pKa = 4.95YY265 pKa = 9.79TKK267 pKa = 10.11FCSAYY272 pKa = 8.73GVRR275 pKa = 11.84RR276 pKa = 11.84GFAKK280 pKa = 10.07TGNNANRR287 pKa = 11.84NN288 pKa = 3.73

Molecular weight: 31.86 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

236

0

236

53188

53

1432

225.4

24.98

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.634 ± 0.313

1.542 ± 0.122

4.715 ± 0.26

5.076 ± 0.294

4.172 ± 0.117

7.165 ± 0.227

1.688 ± 0.122

5.334 ± 0.11

6.067 ± 0.334

8.062 ± 0.166

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.76 ± 0.119

5.443 ± 0.32

5.356 ± 0.14

3.495 ± 0.112

5.721 ± 0.35

6.515 ± 0.287

6.618 ± 0.448

7.069 ± 0.204

1.324 ± 0.068

3.243 ± 0.101
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski