Sodiomyces alkalinus F11

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; sordariomyceta; Sordariomycetes; Hypocreomycetidae; Glomerellales; Plectosphaerellaceae; Sodiomyces; Sodiomyces alkalinus

Average proteome isoelectric point is 6.82

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9397 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3N2PPY4|A0A3N2PPY4_9PEZI Chitinase OS=Sodiomyces alkalinus F11 OX=1314773 GN=SODALDRAFT_281833 PE=4 SV=1
MM1 pKa = 7.15TPKK4 pKa = 10.7SPVDD8 pKa = 3.92EE9 pKa = 4.33YY10 pKa = 11.88AMGSDD15 pKa = 4.32EE16 pKa = 4.5EE17 pKa = 4.95EE18 pKa = 4.19EE19 pKa = 4.36MANLAPGIADD29 pKa = 3.49ICTEE33 pKa = 4.16APPLSVALDD42 pKa = 3.51MDD44 pKa = 3.96EE45 pKa = 4.62EE46 pKa = 4.49SDD48 pKa = 3.64YY49 pKa = 11.85DD50 pKa = 3.67ALFDD54 pKa = 3.99HH55 pKa = 6.38THH57 pKa = 5.9QYY59 pKa = 11.78ASLKK63 pKa = 9.02TDD65 pKa = 3.38STIHH69 pKa = 5.74SQHH72 pKa = 5.75KK73 pKa = 10.34HH74 pKa = 5.24IDD76 pKa = 3.76LLDD79 pKa = 4.05EE80 pKa = 5.54DD81 pKa = 5.22IDD83 pKa = 3.74WTDD86 pKa = 2.96VSRR89 pKa = 11.84VTEE92 pKa = 4.26CEE94 pKa = 4.02APDD97 pKa = 3.91GSVPSASS104 pKa = 3.22

Molecular weight: 11.4 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3N2PYJ6|A0A3N2PYJ6_9PEZI Uncharacterized protein OS=Sodiomyces alkalinus F11 OX=1314773 GN=SODALDRAFT_159256 PE=4 SV=1
MM1 pKa = 7.28QFRR4 pKa = 11.84PPPVITTLFATPPPGSSQRR23 pKa = 11.84QRR25 pKa = 11.84RR26 pKa = 11.84SVARR30 pKa = 11.84NHH32 pKa = 6.5PIARR36 pKa = 11.84ISRR39 pKa = 11.84IPPVPAPPPQPMM51 pKa = 3.67

Molecular weight: 5.65 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

9396

1

9397

4378554

49

5151

466.0

51.38

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.108 ± 0.025

1.231 ± 0.01

5.837 ± 0.018

6.096 ± 0.024

3.533 ± 0.016

7.159 ± 0.024

2.579 ± 0.013

4.233 ± 0.016

4.328 ± 0.022

8.764 ± 0.027

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.089 ± 0.009

3.322 ± 0.013

6.703 ± 0.029

3.981 ± 0.019

6.928 ± 0.023

8.168 ± 0.03

5.851 ± 0.015

6.17 ± 0.02

1.403 ± 0.009

2.515 ± 0.013
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski