Trypanosoma vivax (strain Y486)

Taxonomy: cellular organisms; Eukaryota; Discoba; Euglenozoa; Kinetoplastea; Metakinetoplastina; Trypanosomatida; Trypanosomatidae; Trypanosoma; Duttonella; Trypanosoma vivax

Average proteome isoelectric point is 7.44

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3778 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F9WTW1|F9WTW1_TRYVY Uncharacterized protein OS=Trypanosoma vivax (strain Y486) OX=1055687 GN=TvY486_0039010 PE=4 SV=1
MM1 pKa = 7.92LDD3 pKa = 3.98LSHH6 pKa = 6.77CTGITDD12 pKa = 3.97VSPLTTLIEE21 pKa = 4.43LKK23 pKa = 10.76EE24 pKa = 4.19LDD26 pKa = 5.02LNDD29 pKa = 3.59CTGITDD35 pKa = 3.8VSPLSTLIRR44 pKa = 11.84LEE46 pKa = 3.92KK47 pKa = 10.87LNLSDD52 pKa = 3.8CTGITDD58 pKa = 3.92VSPLSTLIRR67 pKa = 11.84LEE69 pKa = 3.79KK70 pKa = 10.79LNLSGCTGITDD81 pKa = 3.76VSPLTTLIEE90 pKa = 4.43LKK92 pKa = 10.76EE93 pKa = 4.19LDD95 pKa = 4.98LNDD98 pKa = 3.6CTRR101 pKa = 11.84ITDD104 pKa = 3.65VSPLSTLIRR113 pKa = 11.84LEE115 pKa = 3.98KK116 pKa = 10.62LCLSGCTGITDD127 pKa = 3.76VSPLTTLIEE136 pKa = 4.21LKK138 pKa = 10.07EE139 pKa = 4.15LCLSGCTGITDD150 pKa = 3.76VSPLTTLIEE159 pKa = 4.21LKK161 pKa = 10.7EE162 pKa = 4.26LGLSGCTGITDD173 pKa = 3.76VSPLTTLIEE182 pKa = 4.21LKK184 pKa = 10.7EE185 pKa = 4.26LGLSGCTGITDD196 pKa = 3.76VSPLTTLIRR205 pKa = 11.84LKK207 pKa = 10.53VLYY210 pKa = 10.59LIGCTGITDD219 pKa = 3.8VSPLTTLIEE228 pKa = 4.24LKK230 pKa = 10.72EE231 pKa = 4.2LDD233 pKa = 3.97LHH235 pKa = 6.69DD236 pKa = 4.19CTGITDD242 pKa = 3.87VSPLTTLIEE251 pKa = 4.21LKK253 pKa = 10.7EE254 pKa = 4.26LGLSGCTGITDD265 pKa = 3.76VSPLTTLIRR274 pKa = 11.84LEE276 pKa = 3.81VLYY279 pKa = 10.91LIGCTGITDD288 pKa = 3.8VSPLTTLIEE297 pKa = 4.24LKK299 pKa = 10.72EE300 pKa = 4.2LDD302 pKa = 3.97LHH304 pKa = 6.69DD305 pKa = 4.19CTGITDD311 pKa = 3.87VSPLTTLIEE320 pKa = 4.29LKK322 pKa = 10.57EE323 pKa = 3.85LALYY327 pKa = 10.4GCTRR331 pKa = 11.84ITDD334 pKa = 3.77VSPLSALIRR343 pKa = 11.84LEE345 pKa = 3.9KK346 pKa = 10.7LCLSGCTGITDD357 pKa = 3.76VSPLTTLIRR366 pKa = 11.84LEE368 pKa = 3.81VLYY371 pKa = 10.91LIGCTGITDD380 pKa = 3.8VSPLTTLIEE389 pKa = 4.21LKK391 pKa = 10.7EE392 pKa = 4.26LGLSGCTGITDD403 pKa = 3.76VSPLTTLIEE412 pKa = 4.21LKK414 pKa = 10.7EE415 pKa = 4.26LGLSGCTGITDD426 pKa = 3.76VSPLTTLIRR435 pKa = 11.84LEE437 pKa = 3.81VLYY440 pKa = 10.91LIGCTGITDD449 pKa = 3.8VSPLTTLIEE458 pKa = 4.24LKK460 pKa = 10.72EE461 pKa = 4.2LDD463 pKa = 3.97LHH465 pKa = 6.66DD466 pKa = 4.18CTGISDD472 pKa = 3.94VSPLPMMIRR481 pKa = 11.84PEE483 pKa = 4.06VLYY486 pKa = 10.03MIGCTGISDD495 pKa = 3.94VSPLTTMIEE504 pKa = 4.33FKK506 pKa = 10.55GAEE509 pKa = 4.12YY510 pKa = 10.32EE511 pKa = 4.1

Molecular weight: 54.37 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|F9WKS7|F9WKS7_TRYVY Uncharacterized protein OS=Trypanosoma vivax (strain Y486) OX=1055687 GN=TvY486_0007440 PE=4 SV=1
MM1 pKa = 7.69RR2 pKa = 11.84GKK4 pKa = 9.72HH5 pKa = 4.17VATRR9 pKa = 11.84SHH11 pKa = 5.44CHH13 pKa = 5.85NYY15 pKa = 9.83RR16 pKa = 11.84SAGQTQDD23 pKa = 3.12AQHH26 pKa = 6.63PLQRR30 pKa = 11.84RR31 pKa = 11.84AACCVSEE38 pKa = 4.56HH39 pKa = 6.15AWTVHH44 pKa = 5.06GASTRR49 pKa = 11.84TAASSACPGKK59 pKa = 8.38TLPIVHH65 pKa = 7.17AEE67 pKa = 3.79PTRR70 pKa = 11.84APRR73 pKa = 11.84CCHH76 pKa = 7.22LLCCPDD82 pKa = 3.34ASGMRR87 pKa = 11.84NADD90 pKa = 3.53TQRR93 pKa = 11.84NDD95 pKa = 3.25HH96 pKa = 6.74AVDD99 pKa = 3.48GCIFQKK105 pKa = 7.89EE106 pKa = 4.26TRR108 pKa = 11.84QPSNASAPSLAHH120 pKa = 5.75IVMVTLHH127 pKa = 6.89RR128 pKa = 11.84SCATQQTCRR137 pKa = 11.84SMRR140 pKa = 11.84APLPGHH146 pKa = 6.8LPSSGAHH153 pKa = 4.07SVQRR157 pKa = 11.84RR158 pKa = 11.84EE159 pKa = 3.78TRR161 pKa = 11.84AVAMHH166 pKa = 5.65STISTQHH173 pKa = 6.27KK174 pKa = 10.38GEE176 pKa = 4.26NNTKK180 pKa = 9.58KK181 pKa = 10.62ARR183 pKa = 11.84VRR185 pKa = 11.84HH186 pKa = 5.76LPASQSTVGQPTHH199 pKa = 5.87TRR201 pKa = 11.84TITQMCPAVTVGHH214 pKa = 6.92HH215 pKa = 6.79APPAPPPSTYY225 pKa = 9.78DD226 pKa = 3.26TAIQRR231 pKa = 11.84PAALAYY237 pKa = 10.3SSQLRR242 pKa = 11.84TALHH246 pKa = 6.23EE247 pKa = 4.25ARR249 pKa = 11.84APLRR253 pKa = 11.84LPLFKK258 pKa = 10.29QQHH261 pKa = 6.9AYY263 pKa = 7.73TQLTAIVTRR272 pKa = 11.84QRR274 pKa = 11.84QLPVSLASDD283 pKa = 3.81NLSKK287 pKa = 10.97QPGKK291 pKa = 10.4SPRR294 pKa = 3.4

Molecular weight: 31.96 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3778

0

3778

1476553

8

4061

390.8

42.63

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.307 ± 0.092

2.516 ± 0.024

4.517 ± 0.026

6.407 ± 0.041

2.592 ± 0.026

6.928 ± 0.034

2.723 ± 0.023

3.04 ± 0.023

5.456 ± 0.043

8.357 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.985 ± 0.014

3.629 ± 0.026

4.004 ± 0.043

3.976 ± 0.03

7.899 ± 0.055

7.426 ± 0.043

6.856 ± 0.049

6.638 ± 0.044

1.269 ± 0.013

1.473 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski