Tai Forest hepadnavirus

Taxonomy: Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Blubervirales; Hepadnaviridae; unclassified Hepadnaviridae

Average proteome isoelectric point is 8.89

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A482KMS0|A0A482KMS0_9HEPA Core protein OS=Tai Forest hepadnavirus OX=2557875 PE=4 SV=1
MM1 pKa = 7.44GNIASEE7 pKa = 4.2SLAPLFGLQVGYY19 pKa = 9.03FLWTKK24 pKa = 9.88ILSIAQSLDD33 pKa = 3.36SWWTSLSFPGGIPRR47 pKa = 11.84CAGLNSPFPTCDD59 pKa = 3.59HH60 pKa = 6.91SPTSCPVTCTGYY72 pKa = 10.69RR73 pKa = 11.84WMCLRR78 pKa = 11.84RR79 pKa = 11.84FIIYY83 pKa = 10.41LLVLVLCLIFLLVLLDD99 pKa = 4.11CKK101 pKa = 10.96GLIPVCPIGPSAGTRR116 pKa = 11.84GVSCRR121 pKa = 11.84TCTQPVDD128 pKa = 3.44EE129 pKa = 5.93GIWIPSCCCSKK140 pKa = 10.88SLEE143 pKa = 4.35GNCTCLAIPSSWALGRR159 pKa = 11.84YY160 pKa = 8.53LWGLASARR168 pKa = 11.84FSWLSSLQPWLQWFAGLSPIVWLLLIWMMWYY199 pKa = 9.19WGPGLLSILTPFIPLLLLFFWISVSLL225 pKa = 3.76

Molecular weight: 25.02 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A482KIF7|A0A482KIF7_9HEPA Surface protein OS=Tai Forest hepadnavirus OX=2557875 PE=4 SV=1
MM1 pKa = 7.74AARR4 pKa = 11.84LRR6 pKa = 11.84CRR8 pKa = 11.84LDD10 pKa = 3.05PSRR13 pKa = 11.84NILHH17 pKa = 6.72LRR19 pKa = 11.84PVGPQSSGRR28 pKa = 11.84SISRR32 pKa = 11.84SSRR35 pKa = 11.84LSPLPAAAALRR46 pKa = 11.84SFHH49 pKa = 6.84RR50 pKa = 11.84SHH52 pKa = 6.65VPLRR56 pKa = 11.84SLPSCAWSPAGPCVLRR72 pKa = 11.84FTCADD77 pKa = 3.31LRR79 pKa = 11.84RR80 pKa = 11.84CMGAPMNFARR90 pKa = 11.84WHH92 pKa = 5.19GRR94 pKa = 11.84RR95 pKa = 11.84MRR97 pKa = 11.84GLTVGTLNRR106 pKa = 11.84WQDD109 pKa = 3.73FYY111 pKa = 11.59HH112 pKa = 6.55GLFMQLWEE120 pKa = 4.2DD121 pKa = 3.66QGWSEE126 pKa = 4.4RR127 pKa = 11.84LCTYY131 pKa = 10.89VLGGCRR137 pKa = 11.84HH138 pKa = 6.08KK139 pKa = 10.88LVPTLL144 pKa = 3.79

Molecular weight: 16.37 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1408

144

819

352.0

39.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.895 ± 0.486

3.338 ± 1.209

3.409 ± 0.658

2.841 ± 0.65

4.901 ± 0.393

6.463 ± 0.659

2.983 ± 0.682

3.693 ± 1.14

3.125 ± 1.125

13.636 ± 1.025

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.634 ± 0.396

3.196 ± 0.69

8.097 ± 0.269

2.983 ± 0.294

7.599 ± 1.6

8.949 ± 0.708

6.25 ± 0.771

5.185 ± 0.366

3.338 ± 0.981

2.486 ± 0.451
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski