Tomato leaf curl Cameroon virus - [Cameroon:Buea:Okra:2008]

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus; unclassified Begomovirus; Tomato leaf curl Cameroon virus

Average proteome isoelectric point is 7.61

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C0MHQ4|C0MHQ4_9GEMI Uncharacterized protein C4 OS=Tomato leaf curl Cameroon virus - [Cameroon:Buea:Okra:2008] OX=693895 GN=C4 PE=3 SV=1
MM1 pKa = 7.6APPRR5 pKa = 11.84KK6 pKa = 9.35FRR8 pKa = 11.84INSKK12 pKa = 10.68NYY14 pKa = 8.18FLTYY18 pKa = 9.21PKK20 pKa = 10.44CSLEE24 pKa = 4.03KK25 pKa = 10.99EE26 pKa = 4.25EE27 pKa = 6.15ALSQLQNLDD36 pKa = 3.17TPTNKK41 pKa = 10.07KK42 pKa = 9.7YY43 pKa = 10.84IKK45 pKa = 9.66ICRR48 pKa = 11.84EE49 pKa = 3.53LHH51 pKa = 6.26EE52 pKa = 4.93NGEE55 pKa = 4.25PHH57 pKa = 6.94LHH59 pKa = 6.18VLLQFEE65 pKa = 4.96GKK67 pKa = 10.14YY68 pKa = 10.06NCQNQRR74 pKa = 11.84FFDD77 pKa = 4.04LVSPTRR83 pKa = 11.84SAHH86 pKa = 4.86FHH88 pKa = 6.55PNIQGAKK95 pKa = 9.25SSSDD99 pKa = 3.11VKK101 pKa = 11.24SYY103 pKa = 10.79IDD105 pKa = 3.7KK106 pKa = 11.33DD107 pKa = 3.49GDD109 pKa = 3.67TLEE112 pKa = 4.14WGEE115 pKa = 3.84FQIDD119 pKa = 3.21GRR121 pKa = 11.84SARR124 pKa = 11.84GGCQNANDD132 pKa = 4.15AAAEE136 pKa = 3.91ALNAGSAEE144 pKa = 3.76AAMAIIKK151 pKa = 9.57EE152 pKa = 4.1KK153 pKa = 10.64LPKK156 pKa = 10.32EE157 pKa = 4.83FIFQYY162 pKa = 11.09HH163 pKa = 5.35NLKK166 pKa = 10.92SNLDD170 pKa = 4.04RR171 pKa = 11.84IFQEE175 pKa = 4.24PPAPYY180 pKa = 9.99VSPFLSSSFNQVPEE194 pKa = 4.2EE195 pKa = 3.99LEE197 pKa = 3.93EE198 pKa = 4.22WVSEE202 pKa = 4.09NVMSAAARR210 pKa = 11.84PLRR213 pKa = 11.84PISIVIEE220 pKa = 4.23GDD222 pKa = 3.09SRR224 pKa = 11.84TGKK227 pKa = 7.65TVWARR232 pKa = 11.84SLGPHH237 pKa = 6.71NYY239 pKa = 10.18LCGHH243 pKa = 7.38LDD245 pKa = 4.18LSPKK249 pKa = 10.08VYY251 pKa = 10.98SNNAWYY257 pKa = 10.49NVIDD261 pKa = 5.17DD262 pKa = 4.41VDD264 pKa = 3.61PHH266 pKa = 5.85YY267 pKa = 11.0LKK269 pKa = 10.7HH270 pKa = 6.2FKK272 pKa = 10.7EE273 pKa = 4.46FMGAQRR279 pKa = 11.84DD280 pKa = 3.81WQSNTKK286 pKa = 9.26YY287 pKa = 10.63GKK289 pKa = 9.49PIQIKK294 pKa = 10.42GGIPTIFLCNPGPTSSYY311 pKa = 10.69IEE313 pKa = 4.09YY314 pKa = 10.67LDD316 pKa = 3.84EE317 pKa = 4.59EE318 pKa = 4.54KK319 pKa = 11.06NAALKK324 pKa = 10.42AWAIKK329 pKa = 10.28NATFFTLNEE338 pKa = 4.11PLYY341 pKa = 10.87SSADD345 pKa = 3.54QSPAPHH351 pKa = 6.69RR352 pKa = 11.84EE353 pKa = 4.17EE354 pKa = 4.44EE355 pKa = 4.23SSEE358 pKa = 3.97AA359 pKa = 3.83

Molecular weight: 40.61 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C0MHQ1|C0MHQ1_9GEMI Replication enhancer OS=Tomato leaf curl Cameroon virus - [Cameroon:Buea:Okra:2008] OX=693895 GN=C3 PE=3 SV=1
MM1 pKa = 7.7SKK3 pKa = 10.44RR4 pKa = 11.84PGDD7 pKa = 3.95IIISTPVSKK16 pKa = 10.56VRR18 pKa = 11.84RR19 pKa = 11.84RR20 pKa = 11.84LNFDD24 pKa = 3.04SPYY27 pKa = 8.82TSRR30 pKa = 11.84AVVPTVRR37 pKa = 11.84GISKK41 pKa = 9.84RR42 pKa = 11.84RR43 pKa = 11.84SWTYY47 pKa = 9.79RR48 pKa = 11.84PMYY51 pKa = 9.54RR52 pKa = 11.84KK53 pKa = 8.92PRR55 pKa = 11.84MYY57 pKa = 10.84RR58 pKa = 11.84MYY60 pKa = 10.6KK61 pKa = 10.21SPDD64 pKa = 3.18VPRR67 pKa = 11.84GCEE70 pKa = 4.4GPCKK74 pKa = 9.92IQSFEE79 pKa = 3.75QRR81 pKa = 11.84DD82 pKa = 3.89DD83 pKa = 3.73VKK85 pKa = 10.8HH86 pKa = 6.08VGIVRR91 pKa = 11.84CVSDD95 pKa = 3.32VTRR98 pKa = 11.84GSGLTHH104 pKa = 6.46RR105 pKa = 11.84VGKK108 pKa = 9.86RR109 pKa = 11.84FCIKK113 pKa = 10.24SICILGKK120 pKa = 9.74VWMDD124 pKa = 3.5EE125 pKa = 4.15NIKK128 pKa = 10.08KK129 pKa = 9.99QNHH132 pKa = 5.07TNNVMFFLVRR142 pKa = 11.84DD143 pKa = 3.66RR144 pKa = 11.84RR145 pKa = 11.84PRR147 pKa = 3.65

Molecular weight: 17.27 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

2

9

1274

85

359

141.6

16.17

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.73 ± 1.024

2.355 ± 0.396

4.474 ± 0.328

5.181 ± 0.924

4.239 ± 0.4

4.71 ± 0.565

4.16 ± 0.521

6.358 ± 0.859

5.573 ± 0.668

7.692 ± 0.815

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.884 ± 0.465

5.887 ± 0.61

5.573 ± 0.735

4.474 ± 0.557

6.515 ± 1.216

8.006 ± 0.82

6.436 ± 1.227

5.887 ± 0.896

1.334 ± 0.179

3.532 ± 0.574
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski