Pacific flying fox faeces associated gemycircularvirus-6

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemykolovirus; Gemykolovirus ptero1; Pteropus associated gemykolovirus 1

Average proteome isoelectric point is 6.57

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A140CTM8|A0A140CTM8_9VIRU RepA OS=Pacific flying fox faeces associated gemycircularvirus-6 OX=1795998 PE=4 SV=1
MM1 pKa = 6.77PAKK4 pKa = 10.47YY5 pKa = 10.07KK6 pKa = 11.05LEE8 pKa = 4.3DD9 pKa = 3.33EE10 pKa = 4.52QYY12 pKa = 11.72FMLTYY17 pKa = 8.22PTIPDD22 pKa = 3.84GFDD25 pKa = 3.0TDD27 pKa = 4.31ALISVLEE34 pKa = 4.16RR35 pKa = 11.84LGCDD39 pKa = 3.23YY40 pKa = 11.01RR41 pKa = 11.84IGRR44 pKa = 11.84EE45 pKa = 3.75LHH47 pKa = 6.17QDD49 pKa = 3.92GKK51 pKa = 9.48PHH53 pKa = 5.62IHH55 pKa = 6.38VMCCFDD61 pKa = 5.54DD62 pKa = 5.09PYY64 pKa = 10.88TDD66 pKa = 3.37RR67 pKa = 11.84DD68 pKa = 3.28ARR70 pKa = 11.84ATFKK74 pKa = 10.66IGTRR78 pKa = 11.84VPNIRR83 pKa = 11.84VRR85 pKa = 11.84RR86 pKa = 11.84AKK88 pKa = 9.84PQRR91 pKa = 11.84GWDD94 pKa = 3.67YY95 pKa = 10.06VAKK98 pKa = 10.38HH99 pKa = 5.99AGQKK103 pKa = 8.71EE104 pKa = 3.79GHH106 pKa = 6.31YY107 pKa = 10.53IIGEE111 pKa = 3.99KK112 pKa = 8.88GTRR115 pKa = 11.84PGGDD119 pKa = 3.12GDD121 pKa = 3.85GSEE124 pKa = 4.88RR125 pKa = 11.84PSNDD129 pKa = 1.97AWFEE133 pKa = 4.12IILARR138 pKa = 11.84TRR140 pKa = 11.84EE141 pKa = 4.08EE142 pKa = 4.09FFDD145 pKa = 3.55AAARR149 pKa = 11.84LAPRR153 pKa = 11.84QLACNFSSLTAYY165 pKa = 10.43ADD167 pKa = 3.15WKK169 pKa = 9.31YY170 pKa = 11.08RR171 pKa = 11.84PVNVEE176 pKa = 2.96WSTPDD181 pKa = 3.34GEE183 pKa = 4.38FSVPFEE189 pKa = 4.07LRR191 pKa = 11.84DD192 pKa = 3.56WVDD195 pKa = 3.66DD196 pKa = 3.92NVRR199 pKa = 11.84GCSGMCSPFPTGGRR213 pKa = 11.84SLPRR217 pKa = 11.84EE218 pKa = 4.05

Molecular weight: 24.86 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A140CTM7|A0A140CTM7_9VIRU Replication-associated protein OS=Pacific flying fox faeces associated gemycircularvirus-6 OX=1795998 PE=4 SV=1
MM1 pKa = 7.87PYY3 pKa = 10.37ARR5 pKa = 11.84RR6 pKa = 11.84YY7 pKa = 3.96TTYY10 pKa = 9.75RR11 pKa = 11.84RR12 pKa = 11.84SYY14 pKa = 9.54PRR16 pKa = 11.84RR17 pKa = 11.84PYY19 pKa = 10.21QSRR22 pKa = 11.84RR23 pKa = 11.84SYY25 pKa = 10.42GVRR28 pKa = 11.84RR29 pKa = 11.84PYY31 pKa = 10.2YY32 pKa = 8.02RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84YY36 pKa = 8.34FTMPYY41 pKa = 7.56YY42 pKa = 10.33SRR44 pKa = 11.84RR45 pKa = 11.84RR46 pKa = 11.84RR47 pKa = 11.84YY48 pKa = 7.95GHH50 pKa = 6.17RR51 pKa = 11.84RR52 pKa = 11.84QYY54 pKa = 9.88GRR56 pKa = 11.84KK57 pKa = 8.13RR58 pKa = 11.84VLNITSRR65 pKa = 11.84KK66 pKa = 9.15KK67 pKa = 10.21QDD69 pKa = 2.9TMLPFTNTTASAVSGGTTFTNQAAVLVGGNTYY101 pKa = 10.06VFPWCCTARR110 pKa = 11.84DD111 pKa = 3.77NTINGSPATVFATAARR127 pKa = 11.84TATEE131 pKa = 4.25CYY133 pKa = 9.36MRR135 pKa = 11.84GLKK138 pKa = 9.86EE139 pKa = 4.23RR140 pKa = 11.84IQIQTNTGMPWQWRR154 pKa = 11.84RR155 pKa = 11.84ICFTLKK161 pKa = 10.73GDD163 pKa = 4.02VLTQYY168 pKa = 11.36NEE170 pKa = 4.01TAYY173 pKa = 9.8KK174 pKa = 10.17IYY176 pKa = 10.76DD177 pKa = 3.67EE178 pKa = 5.09TSDD181 pKa = 2.97GWSRR185 pKa = 11.84IVSNTGVASNLATAVQNLVFAGQQGKK211 pKa = 9.72DD212 pKa = 2.76WTAVFNAKK220 pKa = 9.82VDD222 pKa = 3.87DD223 pKa = 3.95RR224 pKa = 11.84RR225 pKa = 11.84LTLKK229 pKa = 10.29YY230 pKa = 10.64DD231 pKa = 3.02KK232 pKa = 10.28TVYY235 pKa = 9.75IRR237 pKa = 11.84SGNASGVMRR246 pKa = 11.84DD247 pKa = 3.24YY248 pKa = 11.31HH249 pKa = 6.47RR250 pKa = 11.84WHH252 pKa = 7.21PMNANLVYY260 pKa = 10.79DD261 pKa = 4.6DD262 pKa = 5.69DD263 pKa = 4.33EE264 pKa = 7.31AGTSMVPSYY273 pKa = 9.96FSPEE277 pKa = 3.19GRR279 pKa = 11.84AAMGDD284 pKa = 4.17YY285 pKa = 10.67YY286 pKa = 11.48VLDD289 pKa = 4.93IIAGGSGATSSDD301 pKa = 2.93QLTFNPQTTLYY312 pKa = 8.18WHH314 pKa = 6.53EE315 pKa = 4.1RR316 pKa = 3.51

Molecular weight: 36.45 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

871

218

337

290.3

33.42

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.348 ± 0.265

2.067 ± 0.344

7.692 ± 1.107

4.937 ± 1.147

4.592 ± 0.618

8.266 ± 0.419

1.837 ± 0.243

4.133 ± 0.41

4.363 ± 0.607

5.281 ± 0.373

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.181 ± 0.281

3.559 ± 0.645

5.281 ± 0.682

2.87 ± 0.527

9.874 ± 0.683

5.052 ± 0.549

6.774 ± 1.695

5.396 ± 0.301

2.641 ± 0.278

5.855 ± 1.003
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski