Monaibacterium marinum

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Monaibacterium

Average proteome isoelectric point is 5.94

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3548 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2C9CRK9|A0A2C9CRK9_9RHOB Protein translocase subunit SecA OS=Monaibacterium marinum OX=1690039 GN=secA PE=3 SV=1
MM1 pKa = 5.65QTYY4 pKa = 10.21RR5 pKa = 11.84IISMTMGMMLSAGTAMACAPGEE27 pKa = 4.13DD28 pKa = 3.88LRR30 pKa = 11.84ATLGFADD37 pKa = 4.69LTAAEE42 pKa = 4.04QDD44 pKa = 3.21GFARR48 pKa = 11.84LFVPEE53 pKa = 4.02QAVLTSEE60 pKa = 4.98NIAIDD65 pKa = 3.69DD66 pKa = 3.79AFGFARR72 pKa = 11.84CDD74 pKa = 3.41LGGMGDD80 pKa = 3.61DD81 pKa = 3.85TLITFALPGVFCEE94 pKa = 4.44EE95 pKa = 4.11NCLLWALHH103 pKa = 5.47RR104 pKa = 11.84TEE106 pKa = 4.6EE107 pKa = 4.62DD108 pKa = 2.84DD109 pKa = 3.51WQIILAAEE117 pKa = 4.39GAVTVAGSYY126 pKa = 11.1SMGWPDD132 pKa = 4.54LVAHH136 pKa = 6.6GEE138 pKa = 4.14GFADD142 pKa = 3.6IVHH145 pKa = 6.54KK146 pKa = 10.68FDD148 pKa = 3.36GASYY152 pKa = 10.21HH153 pKa = 7.45DD154 pKa = 4.31EE155 pKa = 4.47LEE157 pKa = 4.0GLIYY161 pKa = 11.0GEE163 pKa = 5.04VFDD166 pKa = 5.96LPQATSWQADD176 pKa = 3.44EE177 pKa = 4.49FDD179 pKa = 3.98FVGVVPGSPGPAGEE193 pKa = 4.16AVIALEE199 pKa = 5.23AVAQQLDD206 pKa = 3.43ISIDD210 pKa = 3.41GLAAGLTDD218 pKa = 4.89LNGDD222 pKa = 4.75EE223 pKa = 4.24IPEE226 pKa = 4.26VIVQGEE232 pKa = 4.18GAEE235 pKa = 4.17FCAADD240 pKa = 4.05GCRR243 pKa = 11.84TWIVSITAPNATILADD259 pKa = 3.54VTAQGTPEE267 pKa = 3.8IAASTNGAYY276 pKa = 9.88RR277 pKa = 11.84DD278 pKa = 3.67IIIWSNAGARR288 pKa = 11.84VLRR291 pKa = 11.84HH292 pKa = 6.79DD293 pKa = 4.16GNTYY297 pKa = 10.01HH298 pKa = 7.42

Molecular weight: 31.51 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2C9CNC5|A0A2C9CNC5_9RHOB ADP-ribose pyrophosphatase YjhB NUDIX family OS=Monaibacterium marinum OX=1690039 GN=SAMN06273572_101565 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLVRR12 pKa = 11.84KK13 pKa = 8.96RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.62GFRR19 pKa = 11.84SRR21 pKa = 11.84MATKK25 pKa = 10.45NGRR28 pKa = 11.84KK29 pKa = 9.03ILNARR34 pKa = 11.84RR35 pKa = 11.84AQGRR39 pKa = 11.84KK40 pKa = 9.02HH41 pKa = 6.53LSAA44 pKa = 5.78

Molecular weight: 5.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3548

0

3548

1142599

30

10629

322.0

34.85

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.229 ± 0.063

0.868 ± 0.016

6.347 ± 0.063

5.533 ± 0.05

3.606 ± 0.032

8.681 ± 0.078

2.035 ± 0.03

5.554 ± 0.035

2.658 ± 0.038

9.836 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.883 ± 0.031

2.798 ± 0.032

4.77 ± 0.056

3.486 ± 0.026

6.432 ± 0.064

5.398 ± 0.045

5.925 ± 0.072

7.419 ± 0.038

1.339 ± 0.022

2.206 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski