Sanxia atyid shrimp virus 1

Taxonomy: Viruses; Riboviria; unclassified Riboviria; unclassified RNA viruses ShiM-2016

Average proteome isoelectric point is 7.09

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L3KK18|A0A1L3KK18_9VIRU Uncharacterized protein OS=Sanxia atyid shrimp virus 1 OX=1923355 PE=4 SV=1
MM1 pKa = 7.43NFLTASKK8 pKa = 7.36TTLALIWLRR17 pKa = 11.84IAPMAIFWIVSSVVRR32 pKa = 11.84LSVTTVCPNQLLNRR46 pKa = 11.84LNTLNSLFPVAISVVLHH63 pKa = 5.14VLRR66 pKa = 11.84FFLTLLSHH74 pKa = 5.98VNILILMLVIRR85 pKa = 11.84GLEE88 pKa = 3.85FSSLIFSLITSCPLSLLLYY107 pKa = 10.14YY108 pKa = 11.1LLLFLLAVSPAFLLAAAVANKK129 pKa = 10.01LFSPSSATTCVFMALLPLVTSDD151 pKa = 4.86ALFLSSSSVHH161 pKa = 6.42FNDD164 pKa = 2.98ITQGSISPSPSVPSGQWFLTSPLTMLNPEE193 pKa = 4.25CSYY196 pKa = 11.09ILSTSRR202 pKa = 11.84IWPSEE207 pKa = 3.92CEE209 pKa = 4.2LPLSCGDD216 pKa = 3.61MLEE219 pKa = 4.2KK220 pKa = 10.56QSLGGAFFSEE230 pKa = 4.06TDD232 pKa = 2.99LCFRR236 pKa = 11.84FFHH239 pKa = 7.54DD240 pKa = 3.22YY241 pKa = 9.2HH242 pKa = 6.51TFQSYY247 pKa = 8.83IVYY250 pKa = 10.23GILEE254 pKa = 4.36GTLNTSSYY262 pKa = 11.1QIDD265 pKa = 3.94FHH267 pKa = 9.37SFDD270 pKa = 3.8PPIWLHH276 pKa = 5.9SPSARR281 pKa = 11.84RR282 pKa = 11.84SGWIHH287 pKa = 7.07LDD289 pKa = 3.01AAHH292 pKa = 6.56YY293 pKa = 8.93FLHH296 pKa = 6.86YY297 pKa = 10.78DD298 pKa = 3.52PLKK301 pKa = 11.08NKK303 pKa = 9.04YY304 pKa = 9.6AWDD307 pKa = 3.51SSLFNTKK314 pKa = 10.09RR315 pKa = 11.84EE316 pKa = 3.98CHH318 pKa = 5.47MVNTSAVFFEE328 pKa = 5.07APYY331 pKa = 10.35IDD333 pKa = 4.76YY334 pKa = 7.73NTSSLLLHH342 pKa = 6.9DD343 pKa = 6.43LIFQDD348 pKa = 4.51YY349 pKa = 9.44LSSGIPLNYY358 pKa = 9.03TLHH361 pKa = 6.44PKK363 pKa = 8.25KK364 pKa = 9.05TYY366 pKa = 10.96AFGTEE371 pKa = 4.07LVLSFVPNSYY381 pKa = 10.6FSFSVLGNGFISSDD395 pKa = 3.75SFTHH399 pKa = 6.77LLDD402 pKa = 3.8NGTYY406 pKa = 8.35ITIEE410 pKa = 4.14SDD412 pKa = 3.57PEE414 pKa = 4.02TLSISLYY421 pKa = 10.22PLDD424 pKa = 4.32FNPFVEE430 pKa = 3.82IFEE433 pKa = 4.51YY434 pKa = 10.31KK435 pKa = 9.63GHH437 pKa = 6.34SFSFMCTSTCAVEE450 pKa = 4.18FLHH453 pKa = 5.67YY454 pKa = 10.03TNILSWLNLTSTSIKK469 pKa = 8.51NTKK472 pKa = 7.72EE473 pKa = 3.46RR474 pKa = 11.84CVRR477 pKa = 11.84SISKK481 pKa = 10.07VSYY484 pKa = 8.54TNFVTGIVYY493 pKa = 10.38RR494 pKa = 11.84SISTFEE500 pKa = 3.84HH501 pKa = 5.49AVIRR505 pKa = 11.84LFRR508 pKa = 11.84LFVDD512 pKa = 5.47AISTAFQQLLTYY524 pKa = 8.93VLSMEE529 pKa = 4.21RR530 pKa = 11.84QFKK533 pKa = 10.32IIEE536 pKa = 4.09FGIILALCTAHH547 pKa = 6.64FNNISTALLLTLSIWYY563 pKa = 7.65VAPFNTQQ570 pKa = 2.34

Molecular weight: 64.36 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L3KKA1|A0A1L3KKA1_9VIRU Helicase OS=Sanxia atyid shrimp virus 1 OX=1923355 PE=4 SV=1
MM1 pKa = 7.95ADD3 pKa = 3.05TAKK6 pKa = 10.47RR7 pKa = 11.84PRR9 pKa = 11.84FFTRR13 pKa = 11.84PPPMMPRR20 pKa = 11.84GPPPQARR27 pKa = 11.84KK28 pKa = 9.09SARR31 pKa = 11.84SRR33 pKa = 11.84KK34 pKa = 9.22NGQSSDD40 pKa = 3.57FFEE43 pKa = 4.91GVLDD47 pKa = 3.81ALRR50 pKa = 11.84RR51 pKa = 11.84TSSQPDD57 pKa = 3.88VLCLLALALLVAYY70 pKa = 9.56DD71 pKa = 3.31ITHH74 pKa = 7.24IDD76 pKa = 2.94RR77 pKa = 11.84LAAFFSARR85 pKa = 11.84TSTTQLGSWISANSQVIAGLVILLPGLYY113 pKa = 9.85KK114 pKa = 10.68FPVKK118 pKa = 10.56SRR120 pKa = 11.84FIAGIVTFVTVLALPSQSSYY140 pKa = 11.34VYY142 pKa = 9.62FAVSLGMTVFWQVRR156 pKa = 11.84QPGIRR161 pKa = 11.84LVLFSALLLYY171 pKa = 10.67LYY173 pKa = 9.84VFNGAALGISPTTSATPPPVTTTTASTTTRR203 pKa = 11.84PPAGRR208 pKa = 3.68

Molecular weight: 22.55 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

3699

128

2629

739.8

82.93

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.921 ± 0.686

2.379 ± 0.685

6.164 ± 1.489

3.839 ± 0.629

5.758 ± 0.89

4.38 ± 0.445

2.703 ± 0.335

6.11 ± 0.443

4.866 ± 1.221

10.192 ± 1.614

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.974 ± 0.265

4.028 ± 0.435

5.569 ± 0.565

2.595 ± 0.494

4.677 ± 0.702

9.651 ± 1.041

5.434 ± 1.214

7.651 ± 0.728

1.027 ± 0.237

4.082 ± 0.279
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski