Ornithobacterium rhinotracheale (strain ATCC 51463 / DSM 15997 / CCUG 23171 / CIP 104009 / LMG 9086)

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Weeksellaceae; Ornithobacterium; Ornithobacterium rhinotracheale

Average proteome isoelectric point is 6.8

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2138 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|I3ZZL8|I3ZZL8_ORNRL Isoleucine patch superfamily enzyme carbonic anhydrase/acetyltransferase OS=Ornithobacterium rhinotracheale (strain ATCC 51463 / DSM 15997 / CCUG 23171 / CIP 104009 / LMG 9086) OX=867902 GN=Ornrh_0959 PE=4 SV=1
MM1 pKa = 7.27IQFFSEE7 pKa = 4.52TEE9 pKa = 3.99DD10 pKa = 3.47FTLEE14 pKa = 4.05DD15 pKa = 3.7SQVFADD21 pKa = 4.11WLNACAEE28 pKa = 4.05RR29 pKa = 11.84HH30 pKa = 5.59GYY32 pKa = 9.45EE33 pKa = 4.37IEE35 pKa = 4.89DD36 pKa = 3.42INYY39 pKa = 8.99IFCDD43 pKa = 3.85DD44 pKa = 4.51EE45 pKa = 4.43YY46 pKa = 11.89LLAINQKK53 pKa = 10.11HH54 pKa = 6.56LDD56 pKa = 3.34HH57 pKa = 7.75DD58 pKa = 5.1YY59 pKa = 9.52YY60 pKa = 11.28TDD62 pKa = 5.1IITFDD67 pKa = 3.69YY68 pKa = 11.04GDD70 pKa = 4.1EE71 pKa = 4.2EE72 pKa = 4.65VLSGDD77 pKa = 3.15IFISIDD83 pKa = 3.4RR84 pKa = 11.84VSDD87 pKa = 3.38NAFEE91 pKa = 4.12YY92 pKa = 11.05SSDD95 pKa = 3.54FEE97 pKa = 5.84AEE99 pKa = 4.0LGRR102 pKa = 11.84VMIHH106 pKa = 6.6GLLHH110 pKa = 4.95MMGYY114 pKa = 9.76KK115 pKa = 10.45DD116 pKa = 3.24KK117 pKa = 11.16TEE119 pKa = 4.1EE120 pKa = 4.1EE121 pKa = 4.14EE122 pKa = 4.02QEE124 pKa = 3.95MRR126 pKa = 11.84NKK128 pKa = 10.28EE129 pKa = 4.14DD130 pKa = 3.24EE131 pKa = 4.17CLQLIFNDD139 pKa = 3.7SDD141 pKa = 3.52EE142 pKa = 4.59EE143 pKa = 4.16EE144 pKa = 4.16

Molecular weight: 17.09 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|I3ZZS0|I3ZZS0_ORNRL Uncharacterized protein OS=Ornithobacterium rhinotracheale (strain ATCC 51463 / DSM 15997 / CCUG 23171 / CIP 104009 / LMG 9086) OX=867902 GN=Ornrh_1012 PE=4 SV=1
MM1 pKa = 7.84PSGKK5 pKa = 9.32KK6 pKa = 9.55RR7 pKa = 11.84KK8 pKa = 7.23RR9 pKa = 11.84HH10 pKa = 5.2KK11 pKa = 10.88VSTHH15 pKa = 3.99KK16 pKa = 10.28RR17 pKa = 11.84KK18 pKa = 9.7KK19 pKa = 8.81RR20 pKa = 11.84RR21 pKa = 11.84RR22 pKa = 11.84LNRR25 pKa = 11.84HH26 pKa = 5.27KK27 pKa = 10.6KK28 pKa = 9.72KK29 pKa = 10.58KK30 pKa = 10.03

Molecular weight: 3.82 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2138

0

2138

688764

30

2361

322.2

36.51

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.628 ± 0.051

0.769 ± 0.016

5.311 ± 0.032

6.984 ± 0.069

5.185 ± 0.049

6.385 ± 0.05

1.729 ± 0.026

7.453 ± 0.047

8.438 ± 0.052

9.265 ± 0.059

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.269 ± 0.023

6.034 ± 0.058

3.586 ± 0.029

3.855 ± 0.031

3.657 ± 0.032

5.995 ± 0.044

5.031 ± 0.032

6.12 ± 0.042

1.063 ± 0.018

4.244 ± 0.039
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski