Gordonia phage Catfish

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Vendettavirus; unclassified Vendettavirus

Average proteome isoelectric point is 6.09

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 78 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A385D1F9|A0A385D1F9_9CAUD Tail fiber protein OS=Gordonia phage Catfish OX=2301538 GN=17 PE=4 SV=1
MM1 pKa = 7.55HH2 pKa = 8.33DD3 pKa = 3.81YY4 pKa = 10.59RR5 pKa = 11.84HH6 pKa = 6.08SATFAGVAEE15 pKa = 4.34SGPLEE20 pKa = 4.18GAEE23 pKa = 4.42AFDD26 pKa = 5.17LVPPLYY32 pKa = 10.88SRR34 pKa = 11.84DD35 pKa = 3.34VTDD38 pKa = 3.45YY39 pKa = 10.6FDD41 pKa = 3.63RR42 pKa = 11.84VYY44 pKa = 10.52VTVDD48 pKa = 3.57DD49 pKa = 5.01VPDD52 pKa = 3.92EE53 pKa = 4.37NDD55 pKa = 3.48PDD57 pKa = 3.89VSTKK61 pKa = 8.31EE62 pKa = 3.81TAVYY66 pKa = 10.24GLAGTIEE73 pKa = 4.29GQLAAIRR80 pKa = 11.84LGGYY84 pKa = 9.48VGGAEE89 pKa = 3.99PAQALRR95 pKa = 11.84LMGYY99 pKa = 10.42ACDD102 pKa = 3.94CC103 pKa = 4.36

Molecular weight: 11.01 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A385D1R1|A0A385D1R1_9CAUD Uncharacterized protein OS=Gordonia phage Catfish OX=2301538 GN=24 PE=4 SV=1
MM1 pKa = 6.46TAKK4 pKa = 10.35HH5 pKa = 6.16AGRR8 pKa = 11.84STRR11 pKa = 11.84AWRR14 pKa = 11.84RR15 pKa = 11.84LKK17 pKa = 10.55AAFRR21 pKa = 11.84RR22 pKa = 11.84KK23 pKa = 9.81CADD26 pKa = 2.84ARR28 pKa = 11.84AVCWLCGQPIDD39 pKa = 3.99YY40 pKa = 10.47ALEE43 pKa = 4.48HH44 pKa = 5.66PHH46 pKa = 7.08PYY48 pKa = 10.54AFEE51 pKa = 5.1PDD53 pKa = 3.64HH54 pKa = 5.46YY55 pKa = 10.62HH56 pKa = 6.83PVATHH61 pKa = 5.7PHH63 pKa = 6.1LAEE66 pKa = 5.01DD67 pKa = 4.2PANLRR72 pKa = 11.84PSHH75 pKa = 6.7ADD77 pKa = 3.15CNKK80 pKa = 9.7RR81 pKa = 11.84RR82 pKa = 11.84GDD84 pKa = 3.55RR85 pKa = 11.84APTFGLGRR93 pKa = 11.84QSRR96 pKa = 11.84KK97 pKa = 6.43WW98 pKa = 3.25

Molecular weight: 11.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

78

0

78

14657

36

1429

187.9

20.4

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.144 ± 0.589

0.832 ± 0.118

6.734 ± 0.301

6.42 ± 0.325

2.975 ± 0.174

9.634 ± 0.43

1.815 ± 0.144

3.582 ± 0.16

3.493 ± 0.285

7.826 ± 0.25

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.026 ± 0.084

2.872 ± 0.188

4.796 ± 0.218

2.9 ± 0.138

7.791 ± 0.384

5.499 ± 0.294

6.086 ± 0.219

8.085 ± 0.196

1.904 ± 0.115

2.586 ± 0.248
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski