Cronobacter phage vB_CsaP_009

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Privateervirus; Cronobacter virus 009

Average proteome isoelectric point is 6.42

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 140 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A679FHZ9|A0A679FHZ9_9CAUD Uncharacterized protein OS=Cronobacter phage vB_CsaP_009 OX=2699738 PE=4 SV=1
MM1 pKa = 7.56ACCDD5 pKa = 3.44GWNLLSDD12 pKa = 4.05GSKK15 pKa = 10.91PNGVCPDD22 pKa = 4.2CGVDD26 pKa = 3.53TLDD29 pKa = 3.87GDD31 pKa = 4.22SVEE34 pKa = 4.14GCFYY38 pKa = 11.26SKK40 pKa = 10.4VVCEE44 pKa = 4.38TCGDD48 pKa = 3.91APCDD52 pKa = 3.74EE53 pKa = 4.76SCC55 pKa = 5.14

Molecular weight: 5.67 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A679FGB6|A0A679FGB6_9CAUD Uncharacterized protein OS=Cronobacter phage vB_CsaP_009 OX=2699738 PE=4 SV=1
MM1 pKa = 7.46ATLKK5 pKa = 10.82YY6 pKa = 9.84QVKK9 pKa = 9.87KK10 pKa = 10.64FKK12 pKa = 10.56KK13 pKa = 9.4SQIKK17 pKa = 8.91SASMLINGDD26 pKa = 3.56VYY28 pKa = 11.06KK29 pKa = 11.13GNNGDD34 pKa = 4.12LYY36 pKa = 11.21AVTGKK41 pKa = 8.46TSRR44 pKa = 11.84GLYY47 pKa = 9.38VSNLRR52 pKa = 11.84TGCSGYY58 pKa = 10.4RR59 pKa = 11.84SNKK62 pKa = 6.12MHH64 pKa = 6.85NPQAKK69 pKa = 9.14PRR71 pKa = 11.84LIVIGSIDD79 pKa = 3.47ITSMQIRR86 pKa = 3.76

Molecular weight: 9.54 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

140

0

140

27768

37

1530

198.3

22.44

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.499 ± 0.277

1.167 ± 0.135

6.781 ± 0.2

7.336 ± 0.272

4.177 ± 0.194

6.594 ± 0.27

1.804 ± 0.095

6.706 ± 0.192

7.977 ± 0.284

7.808 ± 0.211

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.003 ± 0.103

5.946 ± 0.148

3.378 ± 0.149

3.126 ± 0.169

4.415 ± 0.156

7.375 ± 0.169

5.485 ± 0.167

6.457 ± 0.187

1.152 ± 0.107

3.814 ± 0.174
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski