Rhodopirellula solitaria

Taxonomy: cellular organisms; Bacteria; PVC group; Planctomycetes;

Get precalculated fractions of proteins

Get csv file with sequences according to given criteria:

     pH   -     Method  IPC2.protein.svr19 IPC2_protein IPC_protein Toseland Bjellqvist Dawson Wikipedia Rodwell Grimsley Solomon Lehninger ProMoST Nozaki Thurlkill DTASelect EMBOSS Sillero IPC_peptide IPC2_peptide IPC2.peptide.svr19 Patrickios

    Molecular weight   -  kDa    
                                                                                       Download

* You can choose from 21 different methods for calculating isoelectric point

---

Summary statistics related to proteome-wise predictions

---

Protein with the lowest isoelectric point:

---

Protein with the highest isoelectric point:

---

Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

---

General Statistics

Number of major isoforms	Number of additional isoforms	Number of all proteins	Number of amino acids	Min. Seq. Length	Max. Seq. Length	Avg. Seq. Length	Avg. Mol. Weight
5210	0	5210	1953092	29	7638	374.9	41.13

Amino acid frequency

Ala	Cys	Asp	Glu	Phe	Gly	His	Ile	Lys	Leu
10.089 ± 0.037	1.158 ± 0.018	6.503 ± 0.037	6.101 ± 0.03	3.519 ± 0.019	7.72 ± 0.044	2.237 ± 0.022	4.96 ± 0.02	3.086 ± 0.037	9.448 ± 0.036

Met	Asn	Gln	Pro	Arg	Ser	Thr	Val	Trp	Tyr
2.251 ± 0.021	3.009 ± 0.031	5.381 ± 0.023	4.086 ± 0.022	6.904 ± 0.038	6.979 ± 0.029	5.64 ± 0.035	7.1 ± 0.027	1.496 ± 0.018	2.33 ± 0.02

Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944

Contact: Lukasz P. Kozlowski

---