Amino acid dipepetide frequency for Eimeria tenella RNA virus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
11.841AlaAla: 11.841 ± 1.392
1.615AlaCys: 1.615 ± 0.605
8.073AlaAsp: 8.073 ± 0.297
8.611AlaGlu: 8.611 ± 1.012
2.691AlaPhe: 2.691 ± 1.76
11.841AlaGly: 11.841 ± 1.1
2.691AlaHis: 2.691 ± 0.099
3.229AlaIle: 3.229 ± 0.451
0.538AlaLys: 0.538 ± 0.479
11.841AlaLeu: 11.841 ± 1.931
3.229AlaMet: 3.229 ± 0.451
1.076AlaAsn: 1.076 ± 0.127
8.611AlaPro: 8.611 ± 3.504
4.844AlaGln: 4.844 ± 0.985
8.611AlaArg: 8.611 ± 1.843
6.459AlaSer: 6.459 ± 1.733
7.535AlaThr: 7.535 ± 1.716
5.382AlaVal: 5.382 ± 0.198
1.615AlaTrp: 1.615 ± 0.605
5.382AlaTyr: 5.382 ± 1.029
0.0AlaXaa: 0.0 ± 0.0
Cys
1.076CysAla: 1.076 ± 0.957
0.0CysCys: 0.0 ± 0.0
0.538CysAsp: 0.538 ± 0.352
1.615CysGlu: 1.615 ± 0.226
0.0CysPhe: 0.0 ± 0.0
2.153CysGly: 2.153 ± 1.084
1.076CysHis: 1.076 ± 0.704
0.538CysIle: 0.538 ± 0.352
1.615CysLys: 1.615 ± 1.056
3.229CysLeu: 3.229 ± 1.21
0.538CysMet: 0.538 ± 0.352
1.615CysAsn: 1.615 ± 0.226
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
2.153CysArg: 2.153 ± 1.084
0.538CysSer: 0.538 ± 0.352
1.076CysThr: 1.076 ± 0.127
1.076CysVal: 1.076 ± 0.704
0.0CysTrp: 0.0 ± 0.0
0.538CysTyr: 0.538 ± 0.479
0.0CysXaa: 0.0 ± 0.0
Asp
4.844AspAla: 4.844 ± 0.154
1.076AspCys: 1.076 ± 0.127
1.615AspAsp: 1.615 ± 0.226
1.615AspGlu: 1.615 ± 0.226
2.691AspPhe: 2.691 ± 0.732
4.306AspGly: 4.306 ± 0.506
0.538AspHis: 0.538 ± 0.352
4.844AspIle: 4.844 ± 0.154
0.0AspLys: 0.0 ± 0.0
2.691AspLeu: 2.691 ± 0.93
0.538AspMet: 0.538 ± 0.352
0.538AspAsn: 0.538 ± 0.479
5.92AspPro: 5.92 ± 0.28
1.076AspGln: 1.076 ± 0.127
5.92AspArg: 5.92 ± 1.111
4.306AspSer: 4.306 ± 0.506
1.076AspThr: 1.076 ± 0.127
4.306AspVal: 4.306 ± 1.155
1.076AspTrp: 1.076 ± 0.127
3.767AspTyr: 3.767 ± 0.803
0.0AspXaa: 0.0 ± 0.0
Glu
6.459GluAla: 6.459 ± 0.759
1.076GluCys: 1.076 ± 0.957
3.229GluAsp: 3.229 ± 0.451
1.615GluGlu: 1.615 ± 0.226
0.538GluPhe: 0.538 ± 0.352
4.306GluGly: 4.306 ± 0.506
1.615GluHis: 1.615 ± 0.605
2.153GluIle: 2.153 ± 0.253
1.076GluLys: 1.076 ± 0.127
6.997GluLeu: 6.997 ± 3.746
0.538GluMet: 0.538 ± 0.479
1.615GluAsn: 1.615 ± 0.226
2.153GluPro: 2.153 ± 0.253
1.076GluGln: 1.076 ± 0.127
5.92GluArg: 5.92 ± 0.55
2.153GluSer: 2.153 ± 0.578
2.153GluThr: 2.153 ± 1.084
4.844GluVal: 4.844 ± 0.677
1.615GluTrp: 1.615 ± 0.226
1.076GluTyr: 1.076 ± 0.127
0.0GluXaa: 0.0 ± 0.0
Phe
2.153PheAla: 2.153 ± 0.253
1.615PheCys: 1.615 ± 1.056
2.153PheAsp: 2.153 ± 1.084
2.153PheGlu: 2.153 ± 0.578
0.538PhePhe: 0.538 ± 0.479
2.691PheGly: 2.691 ± 0.732
1.615PheHis: 1.615 ± 1.056
0.538PheIle: 0.538 ± 0.352
0.538PheLys: 0.538 ± 0.479
1.615PheLeu: 1.615 ± 0.605
0.0PheMet: 0.0 ± 0.0
0.538PheAsn: 0.538 ± 0.352
1.615PhePro: 1.615 ± 0.605
1.076PheGln: 1.076 ± 0.704
2.153PheArg: 2.153 ± 0.253
0.0PheSer: 0.0 ± 0.0
1.615PheThr: 1.615 ± 0.226
1.076PheVal: 1.076 ± 0.704
1.076PheTrp: 1.076 ± 0.127
0.0PheTyr: 0.0 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
12.917GlyAla: 12.917 ± 0.687
1.615GlyCys: 1.615 ± 0.226
3.767GlyAsp: 3.767 ± 0.803
4.306GlyGlu: 4.306 ± 0.506
3.229GlyPhe: 3.229 ± 1.282
10.226GlyGly: 10.226 ± 3.278
1.615GlyHis: 1.615 ± 0.605
1.615GlyIle: 1.615 ± 0.605
2.153GlyLys: 2.153 ± 0.253
3.229GlyLeu: 3.229 ± 1.21
1.076GlyMet: 1.076 ± 0.127
3.229GlyAsn: 3.229 ± 2.112
6.997GlyPro: 6.997 ± 2.899
4.306GlyGln: 4.306 ± 0.506
8.611GlyArg: 8.611 ± 2.31
5.382GlySer: 5.382 ± 0.198
3.767GlyThr: 3.767 ± 0.858
5.92GlyVal: 5.92 ± 2.211
0.538GlyTrp: 0.538 ± 0.479
2.691GlyTyr: 2.691 ± 0.732
0.0GlyXaa: 0.0 ± 0.0
His
3.229HisAla: 3.229 ± 0.451
0.0HisCys: 0.0 ± 0.0
0.0HisAsp: 0.0 ± 0.0
2.153HisGlu: 2.153 ± 0.578
1.076HisPhe: 1.076 ± 0.957
1.615HisGly: 1.615 ± 0.226
0.0HisHis: 0.0 ± 0.0
0.0HisIle: 0.0 ± 0.0
1.615HisLys: 1.615 ± 0.605
3.229HisLeu: 3.229 ± 0.451
0.538HisMet: 0.538 ± 0.479
1.076HisAsn: 1.076 ± 0.127
1.076HisPro: 1.076 ± 0.127
0.538HisGln: 0.538 ± 0.352
2.153HisArg: 2.153 ± 1.408
1.615HisSer: 1.615 ± 0.605
3.229HisThr: 3.229 ± 1.21
2.153HisVal: 2.153 ± 0.578
0.0HisTrp: 0.0 ± 0.0
0.538HisTyr: 0.538 ± 0.479
0.0HisXaa: 0.0 ± 0.0
Ile
4.306IleAla: 4.306 ± 1.986
0.538IleCys: 0.538 ± 0.479
1.076IleAsp: 1.076 ± 0.127
0.538IleGlu: 0.538 ± 0.479
0.538IlePhe: 0.538 ± 0.479
1.615IleGly: 1.615 ± 0.226
2.153IleHis: 2.153 ± 0.578
0.0IleIle: 0.0 ± 0.0
1.615IleLys: 1.615 ± 1.436
5.92IleLeu: 5.92 ± 0.28
0.0IleMet: 0.0 ± 0.0
2.153IleAsn: 2.153 ± 0.253
1.615IlePro: 1.615 ± 0.605
1.076IleGln: 1.076 ± 0.704
3.229IleArg: 3.229 ± 1.282
1.076IleSer: 1.076 ± 0.127
1.615IleThr: 1.615 ± 1.056
1.615IleVal: 1.615 ± 1.436
0.0IleTrp: 0.0 ± 0.0
2.691IleTyr: 2.691 ± 1.76
0.0IleXaa: 0.0 ± 0.0
Lys
2.691LysAla: 2.691 ± 1.76
0.538LysCys: 0.538 ± 0.479
1.615LysAsp: 1.615 ± 0.226
1.076LysGlu: 1.076 ± 0.127
0.538LysPhe: 0.538 ± 0.352
2.153LysGly: 2.153 ± 0.253
1.076LysHis: 1.076 ± 0.127
1.615LysIle: 1.615 ± 1.436
0.0LysLys: 0.0 ± 0.0
2.691LysLeu: 2.691 ± 0.099
1.615LysMet: 1.615 ± 0.226
0.538LysAsn: 0.538 ± 0.479
0.0LysPro: 0.0 ± 0.0
1.076LysGln: 1.076 ± 0.704
2.153LysArg: 2.153 ± 0.253
0.538LysSer: 0.538 ± 0.352
1.615LysThr: 1.615 ± 0.226
1.076LysVal: 1.076 ± 0.957
0.538LysTrp: 0.538 ± 0.479
0.538LysTyr: 0.538 ± 0.479
0.0LysXaa: 0.0 ± 0.0
Leu
8.611LeuAla: 8.611 ± 0.649
4.306LeuCys: 4.306 ± 0.325
4.844LeuAsp: 4.844 ± 0.677
3.767LeuGlu: 3.767 ± 0.803
2.153LeuPhe: 2.153 ± 1.084
10.226LeuGly: 10.226 ± 0.875
3.229LeuHis: 3.229 ± 0.38
2.691LeuIle: 2.691 ± 0.099
2.153LeuLys: 2.153 ± 0.578
8.611LeuLeu: 8.611 ± 0.181
3.229LeuMet: 3.229 ± 0.451
2.691LeuAsn: 2.691 ± 0.732
7.535LeuPro: 7.535 ± 1.716
3.229LeuGln: 3.229 ± 2.112
5.382LeuArg: 5.382 ± 0.198
8.073LeuSer: 8.073 ± 0.533
3.767LeuThr: 3.767 ± 1.689
8.073LeuVal: 8.073 ± 2.789
2.691LeuTrp: 2.691 ± 0.099
2.153LeuTyr: 2.153 ± 0.253
0.0LeuXaa: 0.0 ± 0.0
Met
4.844MetAla: 4.844 ± 1.815
0.0MetCys: 0.0 ± 0.0
0.538MetAsp: 0.538 ± 0.352
2.153MetGlu: 2.153 ± 1.408
2.153MetPhe: 2.153 ± 0.253
0.538MetGly: 0.538 ± 0.479
1.076MetHis: 1.076 ± 0.127
0.0MetIle: 0.0 ± 0.0
0.538MetLys: 0.538 ± 0.479
1.615MetLeu: 1.615 ± 0.226
1.076MetMet: 1.076 ± 0.898
0.538MetAsn: 0.538 ± 0.352
0.0MetPro: 0.0 ± 0.0
1.076MetGln: 1.076 ± 0.704
1.076MetArg: 1.076 ± 0.704
2.153MetSer: 2.153 ± 0.253
1.076MetThr: 1.076 ± 0.127
1.615MetVal: 1.615 ± 0.605
0.0MetTrp: 0.0 ± 0.0
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
3.229AsnAla: 3.229 ± 1.282
0.538AsnCys: 0.538 ± 0.352
1.076AsnAsp: 1.076 ± 0.957
0.538AsnGlu: 0.538 ± 0.479
0.0AsnPhe: 0.0 ± 0.0
0.0AsnGly: 0.0 ± 0.0
1.615AsnHis: 1.615 ± 0.605
1.615AsnIle: 1.615 ± 0.605
0.0AsnLys: 0.0 ± 0.0
2.691AsnLeu: 2.691 ± 0.099
1.076AsnMet: 1.076 ± 0.127
0.538AsnAsn: 0.538 ± 0.479
2.691AsnPro: 2.691 ± 0.93
0.538AsnGln: 0.538 ± 0.479
2.153AsnArg: 2.153 ± 0.578
2.153AsnSer: 2.153 ± 0.253
2.691AsnThr: 2.691 ± 0.099
1.076AsnVal: 1.076 ± 0.704
0.538AsnTrp: 0.538 ± 0.352
1.076AsnTyr: 1.076 ± 0.127
0.0AsnXaa: 0.0 ± 0.0
Pro
8.611ProAla: 8.611 ± 2.673
0.0ProCys: 0.0 ± 0.0
4.306ProAsp: 4.306 ± 2.167
3.767ProGlu: 3.767 ± 0.858
2.153ProPhe: 2.153 ± 0.253
5.382ProGly: 5.382 ± 0.633
0.538ProHis: 0.538 ± 0.479
1.615ProIle: 1.615 ± 0.226
2.153ProLys: 2.153 ± 0.253
5.382ProLeu: 5.382 ± 0.198
0.538ProMet: 0.538 ± 0.479
1.076ProAsn: 1.076 ± 0.957
2.691ProPro: 2.691 ± 0.732
2.691ProGln: 2.691 ± 0.732
4.844ProArg: 4.844 ± 0.677
3.767ProSer: 3.767 ± 0.858
4.306ProThr: 4.306 ± 1.337
3.229ProVal: 3.229 ± 0.38
1.615ProTrp: 1.615 ± 1.056
1.076ProTyr: 1.076 ± 0.704
0.0ProXaa: 0.0 ± 0.0
Gln
3.767GlnAla: 3.767 ± 0.027
0.0GlnCys: 0.0 ± 0.0
0.538GlnAsp: 0.538 ± 0.352
3.229GlnGlu: 3.229 ± 0.451
0.0GlnPhe: 0.0 ± 0.0
3.229GlnGly: 3.229 ± 0.38
0.538GlnHis: 0.538 ± 0.352
0.538GlnIle: 0.538 ± 0.352
0.0GlnLys: 0.0 ± 0.0
3.767GlnLeu: 3.767 ± 0.027
1.076GlnMet: 1.076 ± 0.74
0.538GlnAsn: 0.538 ± 0.352
2.153GlnPro: 2.153 ± 0.253
1.076GlnGln: 1.076 ± 0.127
0.538GlnArg: 0.538 ± 0.352
4.844GlnSer: 4.844 ± 0.154
2.153GlnThr: 2.153 ± 1.084
2.691GlnVal: 2.691 ± 0.099
0.538GlnTrp: 0.538 ± 0.352
1.076GlnTyr: 1.076 ± 0.127
0.0GlnXaa: 0.0 ± 0.0
Arg
11.302ArgAla: 11.302 ± 0.748
2.153ArgCys: 2.153 ± 0.253
5.382ArgAsp: 5.382 ± 0.198
2.691ArgGlu: 2.691 ± 0.099
1.615ArgPhe: 1.615 ± 0.226
4.306ArgGly: 4.306 ± 0.325
1.076ArgHis: 1.076 ± 0.127
2.153ArgIle: 2.153 ± 1.408
3.767ArgLys: 3.767 ± 0.803
6.997ArgLeu: 6.997 ± 0.424
3.767ArgMet: 3.767 ± 0.027
1.076ArgAsn: 1.076 ± 0.957
5.382ArgPro: 5.382 ± 0.633
1.615ArgGln: 1.615 ± 0.226
8.611ArgArg: 8.611 ± 3.141
8.073ArgSer: 8.073 ± 2.789
1.076ArgThr: 1.076 ± 0.127
6.459ArgVal: 6.459 ± 0.072
2.153ArgTrp: 2.153 ± 0.253
3.767ArgTyr: 3.767 ± 0.803
0.0ArgXaa: 0.0 ± 0.0
Ser
6.997SerAla: 6.997 ± 1.238
1.615SerCys: 1.615 ± 0.605
4.306SerAsp: 4.306 ± 1.155
5.382SerGlu: 5.382 ± 1.859
2.153SerPhe: 2.153 ± 1.408
9.15SerGly: 9.15 ± 1.001
2.691SerHis: 2.691 ± 0.099
1.615SerIle: 1.615 ± 0.226
3.229SerLys: 3.229 ± 1.282
8.611SerLeu: 8.611 ± 0.181
0.538SerMet: 0.538 ± 0.352
1.076SerAsn: 1.076 ± 0.127
2.691SerPro: 2.691 ± 0.099
2.153SerGln: 2.153 ± 1.084
2.691SerArg: 2.691 ± 0.732
4.306SerSer: 4.306 ± 0.325
0.538SerThr: 0.538 ± 0.479
6.459SerVal: 6.459 ± 0.902
1.076SerTrp: 1.076 ± 0.704
2.691SerTyr: 2.691 ± 0.93
0.0SerXaa: 0.0 ± 0.0
Thr
5.92ThrAla: 5.92 ± 1.111
0.0ThrCys: 0.0 ± 0.0
3.229ThrAsp: 3.229 ± 0.451
1.615ThrGlu: 1.615 ± 1.436
0.0ThrPhe: 0.0 ± 0.0
3.229ThrGly: 3.229 ± 1.21
1.615ThrHis: 1.615 ± 0.605
1.615ThrIle: 1.615 ± 1.436
0.538ThrLys: 0.538 ± 0.479
3.767ThrLeu: 3.767 ± 0.803
1.076ThrMet: 1.076 ± 0.704
1.615ThrAsn: 1.615 ± 0.226
1.615ThrPro: 1.615 ± 1.436
1.615ThrGln: 1.615 ± 1.436
5.92ThrArg: 5.92 ± 0.55
2.153ThrSer: 2.153 ± 0.578
3.229ThrThr: 3.229 ± 1.21
5.92ThrVal: 5.92 ± 2.772
2.691ThrTrp: 2.691 ± 0.732
2.153ThrTyr: 2.153 ± 0.253
0.0ThrXaa: 0.0 ± 0.0
Val
6.997ValAla: 6.997 ± 0.407
1.076ValCys: 1.076 ± 0.704
2.691ValAsp: 2.691 ± 0.732
3.229ValGlu: 3.229 ± 0.451
1.615ValPhe: 1.615 ± 0.605
6.459ValGly: 6.459 ± 1.733
1.076ValHis: 1.076 ± 0.127
5.382ValIle: 5.382 ± 2.69
1.076ValLys: 1.076 ± 0.704
7.535ValLeu: 7.535 ± 0.055
1.076ValMet: 1.076 ± 0.127
2.691ValAsn: 2.691 ± 0.099
4.306ValPro: 4.306 ± 1.155
2.691ValGln: 2.691 ± 0.099
5.382ValArg: 5.382 ± 1.029
6.997ValSer: 6.997 ± 0.407
3.229ValThr: 3.229 ± 1.21
4.306ValVal: 4.306 ± 0.506
0.0ValTrp: 0.0 ± 0.0
2.691ValTyr: 2.691 ± 0.099
0.0ValXaa: 0.0 ± 0.0
Trp
2.153TrpAla: 2.153 ± 0.578
1.076TrpCys: 1.076 ± 0.127
1.615TrpAsp: 1.615 ± 0.226
0.0TrpGlu: 0.0 ± 0.0
0.538TrpPhe: 0.538 ± 0.479
1.076TrpGly: 1.076 ± 0.127
0.0TrpHis: 0.0 ± 0.0
0.538TrpIle: 0.538 ± 0.479
0.538TrpLys: 0.538 ± 0.479
2.691TrpLeu: 2.691 ± 1.562
0.0TrpMet: 0.0 ± 0.0
0.0TrpAsn: 0.0 ± 0.0
0.538TrpPro: 0.538 ± 0.352
0.0TrpGln: 0.0 ± 0.0
3.229TrpArg: 3.229 ± 1.282
1.076TrpSer: 1.076 ± 0.704
2.153TrpThr: 2.153 ± 0.578
1.615TrpVal: 1.615 ± 0.605
0.538TrpTrp: 0.538 ± 0.352
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.767TyrAla: 3.767 ± 0.803
0.538TyrCys: 0.538 ± 0.352
2.153TyrAsp: 2.153 ± 1.084
2.153TyrGlu: 2.153 ± 0.253
0.538TyrPhe: 0.538 ± 0.352
2.691TyrGly: 2.691 ± 0.099
0.0TyrHis: 0.0 ± 0.0
1.076TyrIle: 1.076 ± 0.704
0.538TyrLys: 0.538 ± 0.479
4.306TyrLeu: 4.306 ± 0.506
0.538TyrMet: 0.538 ± 0.479
1.615TyrAsn: 1.615 ± 1.056
2.153TyrPro: 2.153 ± 0.578
0.538TyrGln: 0.538 ± 0.479
2.691TyrArg: 2.691 ± 0.099
4.306TyrSer: 4.306 ± 1.986
1.615TyrThr: 1.615 ± 0.605
1.615TyrVal: 1.615 ± 1.056
1.076TyrTrp: 1.076 ± 0.127
1.076TyrTyr: 1.076 ± 0.127
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (1859 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski