Gordonia phage PhorbesPhlower

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Luckytenvirus; unclassified Luckytenvirus

Average proteome isoelectric point is 6.26

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 72 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A516KPS1|A0A516KPS1_9CAUD DUF1508 domain-containing protein OS=Gordonia phage PhorbesPhlower OX=2596973 GN=51 PE=4 SV=1
MM1 pKa = 7.41GVFEE5 pKa = 4.15QVSLVVGGEE14 pKa = 4.13HH15 pKa = 6.69WGSMAPSAAVDD26 pKa = 3.83LAITAYY32 pKa = 10.36AAAQHH37 pKa = 6.84AGDD40 pKa = 3.94TQQ42 pKa = 3.21

Molecular weight: 4.24 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A516KPS7|A0A516KPS7_9CAUD Uncharacterized protein OS=Gordonia phage PhorbesPhlower OX=2596973 GN=50 PE=4 SV=1
MM1 pKa = 7.6TDD3 pKa = 3.19DD4 pKa = 4.5DD5 pKa = 6.0RR6 pKa = 11.84RR7 pKa = 11.84MLDD10 pKa = 3.72LAGQRR15 pKa = 11.84WKK17 pKa = 11.06YY18 pKa = 10.66AGSLEE23 pKa = 4.01QRR25 pKa = 11.84VRR27 pKa = 11.84DD28 pKa = 3.59EE29 pKa = 4.59FGISLTRR36 pKa = 11.84FWQKK40 pKa = 10.39VGQLIDD46 pKa = 3.62TEE48 pKa = 4.28EE49 pKa = 4.33ALAYY53 pKa = 10.43APIVVNRR60 pKa = 11.84LRR62 pKa = 11.84RR63 pKa = 11.84LRR65 pKa = 11.84TARR68 pKa = 11.84RR69 pKa = 11.84RR70 pKa = 3.54

Molecular weight: 8.37 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

72

0

72

13191

37

1797

183.2

19.99

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.675 ± 0.56

0.841 ± 0.173

6.641 ± 0.256

6.08 ± 0.343

2.449 ± 0.142

8.491 ± 0.569

1.986 ± 0.212

4.859 ± 0.248

3.631 ± 0.227

7.831 ± 0.241

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.388 ± 0.16

3.108 ± 0.224

5.542 ± 0.308

3.442 ± 0.253

7.513 ± 0.438

5.648 ± 0.242

6.694 ± 0.325

6.959 ± 0.283

2.107 ± 0.15

2.115 ± 0.127
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski