Malvastrum yellow vein Yunnan virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus

Average proteome isoelectric point is 7.79

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q5K2L6|Q5K2L6_9GEMI Protein V2 OS=Malvastrum yellow vein Yunnan virus OX=290030 GN=AV2 PE=3 SV=1
MM1 pKa = 8.06WDD3 pKa = 3.35PLLNEE8 pKa = 4.38FPEE11 pKa = 4.68TVHH14 pKa = 6.85GFRR17 pKa = 11.84CMLSIKK23 pKa = 9.95YY24 pKa = 9.47LQLLSEE30 pKa = 5.34GYY32 pKa = 10.54SPDD35 pKa = 3.26TVGFDD40 pKa = 5.35LIRR43 pKa = 11.84EE44 pKa = 4.7LISILRR50 pKa = 11.84SRR52 pKa = 11.84NYY54 pKa = 9.91VEE56 pKa = 4.26ASCRR60 pKa = 11.84YY61 pKa = 7.49RR62 pKa = 11.84HH63 pKa = 6.16FYY65 pKa = 10.85SRR67 pKa = 11.84VEE69 pKa = 4.18GASSSEE75 pKa = 3.66LRR77 pKa = 11.84QPLLNPCSCPHH88 pKa = 6.58CPRR91 pKa = 11.84HH92 pKa = 6.31KK93 pKa = 9.94ISKK96 pKa = 9.81LGEE99 pKa = 3.91QAHH102 pKa = 6.52EE103 pKa = 4.16SQAQNVQDD111 pKa = 3.62VV112 pKa = 3.43

Molecular weight: 12.93 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q5K2L6|Q5K2L6_9GEMI Protein V2 OS=Malvastrum yellow vein Yunnan virus OX=290030 GN=AV2 PE=3 SV=1
MM1 pKa = 7.71SKK3 pKa = 10.35RR4 pKa = 11.84PADD7 pKa = 3.5IVISTPGSKK16 pKa = 9.65VRR18 pKa = 11.84RR19 pKa = 11.84RR20 pKa = 11.84LNFDD24 pKa = 3.11SPYY27 pKa = 8.11STRR30 pKa = 11.84AAVPTVRR37 pKa = 11.84VTKK40 pKa = 10.43SRR42 pKa = 11.84SWANRR47 pKa = 11.84PMNRR51 pKa = 11.84KK52 pKa = 7.87PRR54 pKa = 11.84MYY56 pKa = 10.68RR57 pKa = 11.84MYY59 pKa = 10.57RR60 pKa = 11.84SPDD63 pKa = 3.29VPKK66 pKa = 10.81GCEE69 pKa = 4.39GPCKK73 pKa = 10.37VQSFDD78 pKa = 3.26AKK80 pKa = 11.06NDD82 pKa = 3.27IGHH85 pKa = 6.11MGKK88 pKa = 10.22VICLSDD94 pKa = 3.33VTRR97 pKa = 11.84GIGLTHH103 pKa = 6.67RR104 pKa = 11.84VGKK107 pKa = 9.78RR108 pKa = 11.84FCVKK112 pKa = 10.05SLYY115 pKa = 10.31FVGKK119 pKa = 9.14IWMDD123 pKa = 3.34EE124 pKa = 4.02NIKK127 pKa = 10.41VKK129 pKa = 10.66NHH131 pKa = 5.45TNTVLFWIVRR141 pKa = 11.84DD142 pKa = 3.85RR143 pKa = 11.84RR144 pKa = 11.84PTGTPYY150 pKa = 11.16DD151 pKa = 3.75FQQVFNVYY159 pKa = 10.67DD160 pKa = 4.09NEE162 pKa = 4.37PSTATVKK169 pKa = 10.59NDD171 pKa = 3.0QRR173 pKa = 11.84DD174 pKa = 3.37RR175 pKa = 11.84FQVIRR180 pKa = 11.84RR181 pKa = 11.84FQATVTGGQYY191 pKa = 10.18AAKK194 pKa = 8.87EE195 pKa = 3.58QAIIRR200 pKa = 11.84KK201 pKa = 8.88FYY203 pKa = 10.48RR204 pKa = 11.84VNNYY208 pKa = 7.79VVYY211 pKa = 10.32NHH213 pKa = 6.0QEE215 pKa = 3.43AGKK218 pKa = 10.41YY219 pKa = 8.39EE220 pKa = 4.09NHH222 pKa = 6.52TEE224 pKa = 3.99NALLLYY230 pKa = 7.29MACTHH235 pKa = 7.07ASNPVYY241 pKa = 9.99ATLKK245 pKa = 8.67VRR247 pKa = 11.84SYY249 pKa = 10.98FYY251 pKa = 11.25DD252 pKa = 3.13SVTNN256 pKa = 3.98

Molecular weight: 29.64 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1112

97

363

185.3

21.25

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.216 ± 0.938

2.248 ± 0.404

4.586 ± 0.417

4.946 ± 0.905

4.586 ± 0.373

4.946 ± 0.296

3.507 ± 0.611

5.755 ± 0.942

5.935 ± 0.477

7.014 ± 1.208

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.248 ± 0.625

6.205 ± 0.71

5.845 ± 0.476

5.126 ± 0.611

6.655 ± 1.134

9.083 ± 1.621

5.216 ± 0.961

5.486 ± 1.485

1.439 ± 0.206

3.957 ± 0.654
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski