Atopobium rimae ATCC 49626

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Coriobacteriia; Coriobacteriales; Atopobiaceae; Lancefieldella; Lancefieldella rimae

Average proteome isoelectric point is 6.01

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1548 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|B9CK31|B9CK31_9ACTN Primosomal protein N' OS=Atopobium rimae ATCC 49626 OX=553184 GN=priA PE=3 SV=1
MM1 pKa = 7.41KK2 pKa = 9.93PIIVSIDD9 pKa = 3.39DD10 pKa = 3.53RR11 pKa = 11.84LANPGEE17 pKa = 4.01ALPYY21 pKa = 10.26AGHH24 pKa = 7.28LDD26 pKa = 3.66EE27 pKa = 5.46DD28 pKa = 5.0TYY30 pKa = 11.78TLGEE34 pKa = 4.37HH35 pKa = 5.95TFSLPKK41 pKa = 10.73GIDD44 pKa = 3.32YY45 pKa = 11.2DD46 pKa = 4.71LVLTNAGEE54 pKa = 4.76GILVTGILKK63 pKa = 9.96AHH65 pKa = 5.89VVGEE69 pKa = 4.14CDD71 pKa = 3.03RR72 pKa = 11.84CLEE75 pKa = 4.22AATMDD80 pKa = 3.32IAAEE84 pKa = 3.81VDD86 pKa = 3.42EE87 pKa = 5.11YY88 pKa = 11.81YY89 pKa = 11.05LFEE92 pKa = 4.39EE93 pKa = 5.55PINPADD99 pKa = 4.99DD100 pKa = 4.16EE101 pKa = 5.19DD102 pKa = 3.98EE103 pKa = 4.57ADD105 pKa = 3.71YY106 pKa = 11.71SLVSSDD112 pKa = 3.47RR113 pKa = 11.84TIDD116 pKa = 3.66LADD119 pKa = 4.07ALLPSLVMEE128 pKa = 4.51TPFVVLCKK136 pKa = 9.68PDD138 pKa = 3.87CKK140 pKa = 10.68GLCPVCGANLNEE152 pKa = 4.48GDD154 pKa = 4.43CEE156 pKa = 4.01HH157 pKa = 6.67VAQLEE162 pKa = 4.5HH163 pKa = 6.81KK164 pKa = 10.1RR165 pKa = 11.84SEE167 pKa = 4.41DD168 pKa = 3.09ARR170 pKa = 11.84AANPFSVLANLTFDD184 pKa = 3.77EE185 pKa = 4.87EE186 pKa = 4.42EE187 pKa = 3.98

Molecular weight: 20.34 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|B9CLS7|B9CLS7_9ACTN DNA gyrase subunit A OS=Atopobium rimae ATCC 49626 OX=553184 GN=gyrA PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.42RR3 pKa = 11.84TYY5 pKa = 10.34QPNKK9 pKa = 8.9RR10 pKa = 11.84KK11 pKa = 9.76RR12 pKa = 11.84ATTHH16 pKa = 5.7GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.3NGRR28 pKa = 11.84AVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84LKK37 pKa = 10.11GRR39 pKa = 11.84KK40 pKa = 9.03RR41 pKa = 11.84LTVV44 pKa = 3.11

Molecular weight: 5.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1548

0

1548

485172

37

1589

313.4

34.42

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.871 ± 0.073

1.379 ± 0.026

6.045 ± 0.049

6.497 ± 0.06

3.865 ± 0.047

7.451 ± 0.054

2.213 ± 0.029

6.072 ± 0.042

4.92 ± 0.054

9.322 ± 0.066

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.529 ± 0.029

3.388 ± 0.036

3.941 ± 0.036

3.252 ± 0.03

5.261 ± 0.052

6.46 ± 0.052

5.907 ± 0.053

7.671 ± 0.059

1.015 ± 0.024

2.941 ± 0.037
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski