Telfairia golden mosaic virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus

Average proteome isoelectric point is 8.09

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A191KVT3|A0A191KVT3_9GEMI Replication-associated protein OS=Telfairia golden mosaic virus OX=2169737 PE=3 SV=1
MM1 pKa = 7.2HH2 pKa = 7.46AEE4 pKa = 4.14SYY6 pKa = 9.79SAYY9 pKa = 10.56VLSLYY14 pKa = 8.87TWSPYY19 pKa = 9.01FHH21 pKa = 6.87YY22 pKa = 10.99RR23 pKa = 11.84NMWDD27 pKa = 3.29PLLNEE32 pKa = 4.55FPEE35 pKa = 4.66SVHH38 pKa = 6.1GFRR41 pKa = 11.84SMLAVKK47 pKa = 9.84YY48 pKa = 9.53LQAVEE53 pKa = 3.99QTYY56 pKa = 10.31EE57 pKa = 4.23PNTLGHH63 pKa = 6.99DD64 pKa = 4.89LIRR67 pKa = 11.84DD68 pKa = 4.46LICVIRR74 pKa = 11.84AKK76 pKa = 10.71DD77 pKa = 3.54YY78 pKa = 10.69VEE80 pKa = 3.48ATRR83 pKa = 11.84RR84 pKa = 11.84YY85 pKa = 8.99NYY87 pKa = 9.78FHH89 pKa = 7.18ARR91 pKa = 11.84LEE93 pKa = 4.48GASKK97 pKa = 11.25AEE99 pKa = 3.98LRR101 pKa = 11.84QPIYY105 pKa = 10.44QPCCCPHH112 pKa = 6.7CPRR115 pKa = 11.84HH116 pKa = 5.4KK117 pKa = 9.58QTTIMDD123 pKa = 3.89VSSQLPKK130 pKa = 10.74AQDD133 pKa = 3.37VQDD136 pKa = 3.89VQKK139 pKa = 11.2SS140 pKa = 3.38

Molecular weight: 16.45 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A191KVT2|A0A191KVT2_9GEMI Protein V2 OS=Telfairia golden mosaic virus OX=2169737 PE=3 SV=1
MM1 pKa = 7.7SKK3 pKa = 10.44RR4 pKa = 11.84PGDD7 pKa = 3.95IIISTPVSKK16 pKa = 10.56VRR18 pKa = 11.84RR19 pKa = 11.84RR20 pKa = 11.84LNFDD24 pKa = 3.03SPYY27 pKa = 7.84TNRR30 pKa = 11.84VAVPIVQGTSKK41 pKa = 10.21RR42 pKa = 11.84RR43 pKa = 11.84SWTYY47 pKa = 9.41RR48 pKa = 11.84PSYY51 pKa = 9.78RR52 pKa = 11.84KK53 pKa = 8.69PRR55 pKa = 11.84MYY57 pKa = 10.91RR58 pKa = 11.84MYY60 pKa = 10.44RR61 pKa = 11.84SPDD64 pKa = 3.21VPRR67 pKa = 11.84GCEE70 pKa = 4.4GPCKK74 pKa = 9.97IQSFDD79 pKa = 3.31QRR81 pKa = 11.84DD82 pKa = 4.22SVVHH86 pKa = 5.94TGNVRR91 pKa = 11.84CLSDD95 pKa = 3.23VTRR98 pKa = 11.84GGGLTHH104 pKa = 6.43RR105 pKa = 11.84TGKK108 pKa = 10.06RR109 pKa = 11.84FCIKK113 pKa = 10.23SIYY116 pKa = 10.05VLGKK120 pKa = 8.9VWMDD124 pKa = 3.42EE125 pKa = 3.95NVKK128 pKa = 10.46KK129 pKa = 10.93SNHH132 pKa = 5.83TNTCMFWLVRR142 pKa = 11.84DD143 pKa = 3.64RR144 pKa = 11.84RR145 pKa = 11.84PYY147 pKa = 10.9GNSPQDD153 pKa = 3.31FGQVFNMFDD162 pKa = 3.99NEE164 pKa = 4.12PSTATVMNDD173 pKa = 2.37KK174 pKa = 10.42RR175 pKa = 11.84DD176 pKa = 3.49RR177 pKa = 11.84YY178 pKa = 9.22QVLRR182 pKa = 11.84RR183 pKa = 11.84FQVTVTGGPSGCKK196 pKa = 8.84EE197 pKa = 3.5AAIVKK202 pKa = 10.02RR203 pKa = 11.84FFRR206 pKa = 11.84LNHH209 pKa = 5.74HH210 pKa = 5.45VTYY213 pKa = 10.8NHH215 pKa = 6.3QEE217 pKa = 3.75GAKK220 pKa = 10.15YY221 pKa = 10.3EE222 pKa = 4.14NHH224 pKa = 6.42TEE226 pKa = 3.99NALLLYY232 pKa = 7.29MACTHH237 pKa = 7.07ASNPVYY243 pKa = 10.67ASLKK247 pKa = 8.7IRR249 pKa = 11.84MYY251 pKa = 10.73FYY253 pKa = 11.22DD254 pKa = 3.51SVLNN258 pKa = 4.02

Molecular weight: 29.97 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

1624

96

361

203.0

23.22

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.542 ± 0.473

2.032 ± 0.327

5.296 ± 0.354

4.433 ± 0.659

4.495 ± 0.44

4.988 ± 0.496

3.633 ± 0.311

4.803 ± 0.527

5.419 ± 0.494

7.697 ± 0.577

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.34 ± 0.483

5.419 ± 0.413

5.542 ± 0.293

3.571 ± 0.46

7.82 ± 0.858

8.805 ± 0.881

6.281 ± 0.567

6.589 ± 0.805

1.293 ± 0.135

4.002 ± 0.748
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski